Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   NXY85_RS02535 Genome accession   NZ_CP103290
Coordinates   471838..472302 (-) Length   154 a.a.
NCBI ID   WP_003327274.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 466838..477302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS02515 - 467285..469105 (+) 1821 WP_258729124.1 PAS domain-containing protein -
  NXY85_RS02520 - 469128..470297 (-) 1170 WP_258729125.1 aminotransferase A -
  NXY85_RS02525 - 470503..470664 (-) 162 WP_003327276.1 hypothetical protein -
  NXY85_RS02530 cheV 470873..471784 (+) 912 WP_003327275.1 chemotaxis protein CheV -
  NXY85_RS02535 kre 471838..472302 (-) 465 WP_003327274.1 YkyB family protein Regulator
  NXY85_RS02540 - 472425..473720 (-) 1296 WP_258729126.1 MFS transporter -
  NXY85_RS02545 - 473796..474293 (-) 498 WP_087941879.1 L,D-transpeptidase family protein -
  NXY85_RS02550 - 474429..475289 (-) 861 WP_258729127.1 metallophosphoesterase -
  NXY85_RS02555 fadH 475436..476200 (+) 765 WP_258729128.1 2,4-dienoyl-CoA reductase -
  NXY85_RS21535 - 476285..476416 (+) 132 Protein_509 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17942.68 Da        Isoelectric Point: 10.4207

>NTDB_id=721644 NXY85_RS02535 WP_003327274.1 471838..472302(-) (kre) [Bacillus atrophaeus strain NS2]
MDDHAYTKDLRPTIENLSKAVYTVNRHAKTAPNPKYLYTLKKRALQKLVKEGKGKKVGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKNLLQDYVGMKEKPFVTNRQQPTYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=721644 NXY85_RS02535 WP_003327274.1 471838..472302(-) (kre) [Bacillus atrophaeus strain NS2]
ATGGACGACCATGCATATACGAAAGATCTGCGGCCAACCATCGAAAATCTTTCAAAAGCTGTCTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATACTTTGAAAAAACGGGCTTTACAAAAGCTGGTGAAAGAAGGTAAAG
GAAAGAAAGTAGGGCTTCATTTTTCAAAAAATCCAAGGTTTAGCCAACAGCAATCGGACGTGCTCATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCGAACACCTTCCGCATTTAGGTACGCTAAATCAATCGTACCGGAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAAAACCTTTTGCAAGATTATGTCGGCATGAAAGAAAAACCGTTTGTCA
CAAATCGGCAGCAGCCAACTTACCATAAACCTGTTTTCAAAAAGCTTGGAGAAAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

94.156

100

0.942