Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NXY85_RS01455 Genome accession   NZ_CP103290
Coordinates   277479..277904 (+) Length   141 a.a.
NCBI ID   WP_106272104.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 272479..282904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS01415 - 272583..273044 (+) 462 WP_309484972.1 hypothetical protein -
  NXY85_RS01420 - 273864..274189 (-) 326 Protein_283 contact-dependent growth inhibition system immunity protein -
  NXY85_RS01425 - 274178..274498 (+) 321 WP_212064455.1 putative quinol monooxygenase -
  NXY85_RS01430 - 275682..275963 (-) 282 WP_061571258.1 hypothetical protein -
  NXY85_RS01440 - 276356..276510 (+) 155 Protein_286 hypothetical protein -
  NXY85_RS01445 - 276632..276961 (-) 330 WP_010788288.1 hypothetical protein -
  NXY85_RS01450 - 277022..277288 (-) 267 WP_258729034.1 hypothetical protein -
  NXY85_RS01455 nucA/comI 277479..277904 (+) 426 WP_106272104.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NXY85_RS01460 - 278053..278715 (+) 663 WP_258729035.1 MgtC/SapB family protein -
  NXY85_RS01465 - 278773..279012 (-) 240 WP_258729036.1 hypothetical protein -
  NXY85_RS01470 - 279219..279431 (-) 213 WP_003327511.1 aspartyl-phosphate phosphatase Spo0E family protein -
  NXY85_RS01475 - 279491..279706 (-) 216 WP_258729037.1 hypothetical protein -
  NXY85_RS01480 - 280021..281421 (+) 1401 WP_258729038.1 polysaccharide deacetylase family protein -
  NXY85_RS01485 - 281474..281947 (-) 474 WP_063637839.1 YjfA family protein -
  NXY85_RS01490 - 282084..282494 (-) 411 WP_258729039.1 DUF2809 domain-containing protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15444.30 Da        Isoelectric Point: 4.7462

>NTDB_id=721640 NXY85_RS01455 WP_106272104.1 277479..277904(+) (nucA/comI) [Bacillus atrophaeus strain NS2]
MKKWITSLFLTAAILFGLMGAEVYAPQDVKGASRYDQVLYFPFSRYPETGDHIKDAVAAGHSDVCTIDRAGADERREESL
KGIPTKPGYDRDEWPMAVCEEGGAGADIRYVTPSDNRGAGSWVGNQMSGYSDGTRVLFIVQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=721640 NXY85_RS01455 WP_106272104.1 277479..277904(+) (nucA/comI) [Bacillus atrophaeus strain NS2]
ATGAAAAAATGGATCACGAGCTTATTTCTGACCGCAGCGATATTGTTTGGATTGATGGGTGCGGAAGTGTATGCTCCGCA
GGATGTCAAAGGCGCATCACGGTATGATCAGGTTCTTTACTTCCCATTTTCACGTTATCCTGAAACCGGCGATCACATTA
AAGATGCGGTAGCGGCCGGGCATTCAGATGTATGTACGATTGACAGGGCCGGGGCGGATGAGCGCAGGGAGGAGTCTTTA
AAGGGGATTCCTACGAAACCGGGGTATGACCGGGATGAGTGGCCGATGGCTGTATGTGAAGAAGGCGGGGCCGGGGCGGA
TATCCGGTATGTCACCCCATCTGATAATCGAGGCGCCGGTTCATGGGTCGGGAATCAAATGAGCGGTTATTCTGATGGTA
CGAGAGTATTATTTATCGTACAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.73

89.362

0.525