Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   NXY85_RS01190 Genome accession   NZ_CP103290
Coordinates   237086..238249 (+) Length   387 a.a.
NCBI ID   WP_309484970.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 232086..243249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS01155 - 232396..232752 (-) 357 WP_258729011.1 hypothetical protein -
  NXY85_RS01160 - 232806..233987 (+) 1182 WP_374115534.1 putative glycoside hydrolase -
  NXY85_RS01165 - 234138..234716 (+) 579 WP_003327580.1 GNAT family N-acetyltransferase -
  NXY85_RS01170 spx 234897..235292 (+) 396 WP_003327578.1 transcriptional regulator Spx -
  NXY85_RS01175 - 235328..235990 (-) 663 WP_258729013.1 TerC family protein -
  NXY85_RS01180 - 236177..236287 (+) 111 Protein_236 adaptor protein MecA -
  NXY85_RS01185 mecA 236270..236926 (+) 657 WP_061571227.1 adaptor protein MecA Regulator
  NXY85_RS01190 coiA 237086..238249 (+) 1164 WP_309484970.1 competence protein CoiA family protein Machinery gene
  NXY85_RS01195 pepF 238478..240307 (+) 1830 WP_167375115.1 oligoendopeptidase F -
  NXY85_RS01200 - 240343..240510 (-) 168 WP_003327573.1 hypothetical protein -
  NXY85_RS01205 spxH 240825..241727 (-) 903 WP_003327572.1 protease adaptor protein SpxH -
  NXY85_RS01210 - 241724..242122 (-) 399 WP_010788246.1 hemoglobin-like protein HbO -
  NXY85_RS21515 - 242399..242746 (-) 348 Protein_243 lytic transglycosylase domain-containing protein -

Sequence


Protein


Download         Length: 387 a.a.        Molecular weight: 45262.78 Da        Isoelectric Point: 9.6462

>NTDB_id=721639 NXY85_RS01190 WP_309484970.1 237086..238249(+) (coiA) [Bacillus atrophaeus strain NS2]
MFSAVTSSGKTVYLMKERYAATEASELRKTKFFCPVCREQLDVKLGSLKAPHFAHKQNKACTIEFEPESAYHLEGKKQLY
SWLKAKGCSPILEPYVKSIQQRPDIMANVQGDMLAFEFQCANLAPDLLYKRTQGLKQAGAEPLWIIGGNRLKRTSRHFFQ
LSAFHWQFMKENPRQFLLFYCPEARSFYKLHHITPFYANYACASLEAIPLTKANVKDMWFSASAPSFQPAAWQNAITRFR
HKPPRFLSKEANHLRLLFYEKRQTPLPFLPPEVFAPIPLGAVFLSPVFIWQGHLYLYMTDLAEKRMSIRFSAVFRFCKMQ
IQKKRIHLRYEYSEQLLREALKQYINFLCGKEFLMEGEKEVYMVKYPVHDCRTLEGVMERDQTCFGE

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=721639 NXY85_RS01190 WP_309484970.1 237086..238249(+) (coiA) [Bacillus atrophaeus strain NS2]
TTGTTTAGTGCTGTGACATCATCAGGTAAAACTGTTTACCTGATGAAAGAAAGATATGCTGCAACAGAAGCGTCGGAATT
GAGAAAAACGAAATTCTTTTGTCCGGTTTGCAGAGAACAGCTCGATGTCAAGCTCGGCTCTTTAAAAGCTCCGCATTTTG
CCCATAAGCAGAATAAAGCTTGCACCATAGAGTTTGAACCGGAGAGCGCCTACCATTTAGAAGGGAAAAAGCAGCTTTAT
TCTTGGCTGAAAGCGAAAGGATGCTCACCTATTCTGGAGCCATATGTAAAAAGCATACAGCAAAGGCCTGACATTATGGC
AAATGTACAAGGAGACATGCTGGCTTTTGAATTTCAATGCGCGAACCTCGCTCCAGACCTCTTATATAAACGCACGCAAG
GCTTAAAGCAAGCAGGGGCTGAACCGCTCTGGATCATCGGCGGAAACCGTTTAAAACGCACGTCAAGGCACTTTTTCCAG
CTATCTGCTTTTCATTGGCAATTCATGAAGGAGAATCCACGGCAGTTCCTGTTGTTTTACTGTCCGGAAGCACGCTCCTT
CTATAAGCTCCATCATATTACCCCGTTCTATGCGAATTATGCCTGCGCCTCACTCGAAGCAATCCCGCTCACAAAAGCAA
ATGTGAAGGATATGTGGTTCTCAGCATCCGCACCTTCCTTTCAGCCTGCTGCCTGGCAAAACGCTATTACCCGTTTTCGG
CATAAACCTCCCCGTTTTTTATCCAAAGAAGCGAATCATCTTCGGCTCCTTTTTTATGAAAAACGCCAGACGCCGCTCCC
ATTTTTACCGCCTGAAGTATTTGCCCCCATTCCTCTTGGAGCCGTTTTTTTAAGTCCTGTTTTCATATGGCAGGGCCATC
TTTATCTGTATATGACCGACCTTGCAGAAAAGCGTATGTCCATCAGGTTTTCTGCTGTTTTTCGATTTTGTAAGATGCAG
ATTCAAAAAAAACGGATTCATTTAAGGTACGAATATAGCGAACAGCTTTTACGTGAGGCATTGAAACAGTACATCAATTT
TCTGTGCGGGAAGGAATTTTTAATGGAGGGTGAGAAAGAAGTATATATGGTGAAATATCCAGTTCATGACTGCCGCACGC
TTGAGGGTGTTATGGAGCGCGACCAAACCTGTTTTGGGGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

57.609

95.09

0.548