Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   NXY85_RS01065 Genome accession   NZ_CP103290
Coordinates   213565..214518 (+) Length   317 a.a.
NCBI ID   WP_010788227.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 208565..219518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS01040 argF 210375..211345 (+) 971 Protein_208 ornithine carbamoyltransferase -
  NXY85_RS01045 - 211427..211606 (+) 180 WP_003327605.1 YjzC family protein -
  NXY85_RS01050 - 211635..211823 (-) 189 WP_003327604.1 YjzD family protein -
  NXY85_RS01055 - 212083..212817 (+) 735 WP_063637420.1 hypothetical protein -
  NXY85_RS01060 - 212900..213475 (+) 576 WP_258729796.1 hypothetical protein -
  NXY85_RS01065 med 213565..214518 (+) 954 WP_010788227.1 BMP family ABC transporter substrate-binding protein Regulator
  NXY85_RS01070 comZ 214533..214724 (+) 192 WP_258729004.1 ComZ family protein Regulator
  NXY85_RS01075 - 214754..214981 (-) 228 WP_003327598.1 hypothetical protein -
  NXY85_RS01080 fabH 215153..216091 (+) 939 WP_003327597.1 beta-ketoacyl-ACP synthase III -
  NXY85_RS01085 fabF 216113..217351 (+) 1239 WP_003327596.1 beta-ketoacyl-ACP synthase II -
  NXY85_RS01090 - 217429..218214 (+) 786 WP_258729005.1 DUF2268 domain-containing protein -
  NXY85_RS01095 - 218406..219392 (+) 987 WP_010788232.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35410.91 Da        Isoelectric Point: 4.4404

>NTDB_id=721634 NXY85_RS01065 WP_010788227.1 213565..214518(+) (med) [Bacillus atrophaeus strain NS2]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLSIQSAYNVDVYYKEGVKTDEDILNAIED
YHKRGINLLFGHGSEYEEMFNLVSEDYPDMEFVISNAESKADNVTSVHLNGEAMGFFGGMTAAHMSKTNQIGVIASFKWQ
PEVDGFIKGAKYENPDITINTKYTDHWDDDTTAVKLYEKIKEEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYGIIAEQYSNGILESGDHYFDFKDHVVEMGTFSPLVDKAFQDKIAALIKTYNRTDELPKKE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=721634 NXY85_RS01065 WP_010788227.1 213565..214518(+) (med) [Bacillus atrophaeus strain NS2]
ATGATCACTAGGCTTGTCATGATCTTTTCTGTCCTCCTGTTACTGAGCGGATGTGGACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGTATGCTCTTTCCCGATACCATCAATGATCTAGTGTGGGGAACAAAAGGGTATAAAGGTTTACTAAGTA
TACAATCTGCATATAATGTCGACGTCTACTATAAAGAAGGCGTTAAGACTGATGAGGATATATTAAACGCCATTGAAGAT
TACCACAAGAGAGGGATAAACCTTCTTTTTGGCCATGGCAGTGAATACGAAGAAATGTTTAATCTGGTCAGTGAGGATTA
CCCGGACATGGAATTTGTCATTTCTAACGCGGAATCAAAAGCCGACAACGTCACAAGCGTTCATCTTAACGGAGAAGCGA
TGGGGTTTTTCGGCGGGATGACAGCCGCACATATGTCCAAAACCAATCAAATCGGCGTGATTGCTTCTTTTAAATGGCAG
CCTGAAGTAGACGGCTTCATCAAAGGGGCCAAGTATGAAAATCCGGACATCACTATCAATACGAAATATACAGACCACTG
GGATGACGATACCACAGCCGTGAAGCTTTATGAGAAGATAAAAGAGGAAGGCGCGGATGTTGTATATCCCGCCGGAGATG
GGTATAATGTTCCTGTCATTCAACAAATTAAAAAAGACGGTCTCTATGCGATCGGCTATGTCACAGACCAGTCTGATCTG
GGCGAAAATACCGTTTTGACAAGCACTGTTCAAAATGTGGACAAGGCCTATGGCATCATAGCCGAGCAATACAGCAACGG
CATTTTGGAAAGCGGAGATCACTATTTCGATTTTAAAGATCATGTCGTTGAAATGGGGACATTCAGTCCTCTAGTTGACA
AAGCCTTCCAAGACAAAATTGCCGCTCTTATCAAAACGTATAATCGAACAGATGAACTGCCGAAAAAAGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

87.382

100

0.874