Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NXY85_RS00565 Genome accession   NZ_CP103290
Coordinates   114467..115015 (+) Length   182 a.a.
NCBI ID   WP_374115525.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain NS2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 109467..120015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY85_RS21500 - 109896..110411 (-) 516 WP_371176577.1 methyl-accepting chemotaxis protein -
  NXY85_RS21505 - 110700..111077 (-) 378 Protein_109 protoglobin domain-containing protein -
  NXY85_RS00550 - 111353..112945 (-) 1593 WP_374115524.1 FAD-dependent oxidoreductase -
  NXY85_RS00555 - 113019..113876 (+) 858 WP_258728939.1 SDR family oxidoreductase -
  NXY85_RS00560 - 113907..114140 (-) 234 WP_003327696.1 IDEAL domain-containing protein -
  NXY85_RS00565 comK 114467..115015 (+) 549 WP_374115525.1 competence protein ComK Regulator
  NXY85_RS00570 - 115191..116555 (+) 1365 WP_258728940.1 site-specific integrase -
  NXY85_RS00575 - 116542..118671 (+) 2130 WP_258728941.1 site-specific integrase -
  NXY85_RS00580 - 118646..119152 (+) 507 WP_258728942.1 hypothetical protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20326.33 Da        Isoelectric Point: 8.3387

>NTDB_id=721631 NXY85_RS00565 WP_374115525.1 114467..115015(+) (comK) [Bacillus atrophaeus strain NS2]
MSQKTDAPLDTYEVNSSTIAVLPEPMNGKMYSKIIEKDCTFYVSMKPLQIVDRSCRYFGSSYAGRKAGTYEVINISHKPP
IMVDLSNHIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTAVTFSNGKTMELPVSCNSFDNRKVKIKKIGISLLCQGTK
ALVTQGEESSKHADEGRAFFVP

Nucleotide


Download         Length: 549 bp        

>NTDB_id=721631 NXY85_RS00565 WP_374115525.1 114467..115015(+) (comK) [Bacillus atrophaeus strain NS2]
ATGAGTCAGAAAACTGACGCACCCCTAGACACCTACGAAGTAAACAGCTCAACAATCGCCGTATTGCCCGAACCGATGAA
CGGGAAAATGTACTCAAAGATCATTGAAAAGGACTGCACGTTTTATGTCAGCATGAAGCCGCTGCAAATTGTCGACCGAA
GCTGCCGTTACTTTGGCTCAAGTTATGCGGGAAGAAAAGCGGGAACCTATGAAGTGATTAACATTTCTCACAAGCCGCCG
ATCATGGTGGACCTTTCCAACCATATCTTTTTATTCCCTACACTTTCTTCAACAAGACCCCAATGCGGCTGGATTTCACA
CGTGCATGTAAAAGAATTTAAAGCCACGGAATTCGACGATACAGCTGTGACCTTTTCCAATGGAAAAACAATGGAGCTCC
CGGTCTCCTGCAATTCGTTCGATAACAGAAAGGTTAAAATCAAGAAGATTGGAATAAGCCTACTCTGCCAAGGGACAAAG
GCACTTGTTACACAAGGTGAAGAATCAAGTAAGCACGCTGACGAAGGGCGTGCTTTTTTTGTGCCTTAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

85.315

78.571

0.67