Detailed information NTG0721577

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: NXX72_RS06630
• Genome accession: NZ_CP103250
• Coordinates: 1730102..1731469 (-)
• Length: 455 a.a.
• NCBI ID: WP_005834974.1
• Uniprot ID: A0A078S0N1
• Organism: Bacteroides uniformis strain BFG-227
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1725102..1736469

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NXX72_RS06625 (NXX72_06625)	-	1728474..1730096 (-)	1623	WP_005834972.1	NAD(P)/FAD-dependent oxidoreductase	-
NXX72_RS06630 (NXX72_06630)	radA	1730102..1731469 (-)	1368	WP_005834974.1	DNA repair protein RadA	Machinery gene
NXX72_RS06635 (NXX72_06635)	-	1731591..1732133 (+)	543	WP_005834976.1	carbonic anhydrase	-
NXX72_RS06640 (NXX72_06640)	-	1732144..1733181 (-)	1038	WP_005834979.1	asparaginase	-
NXX72_RS06645 (NXX72_06645)	thrA	1733630..1736062 (+)	2433	WP_005828504.1	bifunctional aspartate kinase/homoserine dehydrogenase I	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 50119.04 Da
• Isoelectric Point: 7.1118

>NTDB_id=721577 NXX72_RS06630 WP_005834974.1 1730102..1731469(-) (radA) [Bacteroides uniformis strain BFG-227]
MAKEKTVYVCSNCGQDSPKWVGKCPSCGMWNTYVEEVVRKEVVNKRPVSGIETAKAKPITLHEIVADDEPRIDLHDAELN
RVLGGGLVQGSLVLIGGEPGIGKSTLVLQTVLRIPEKRILYVSGEESTRQLKLRADRLTSASSDCLIVCETSLEQIYVHI
KNIRPDIVIIDSIQTISTETLESSPGSIAQVRECSASILRFAKETHTAVILIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGIAIASAIEGIRPFLIETQALVSSAVYGNP
QRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISSILSSNMDTAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFILPKYNMQGLNTKKIKMELIPVRKVEEAFRALFG

Nucleotide

• Length: 1368 bp

>NTDB_id=721577 NXX72_RS06630 WP_005834974.1 1730102..1731469(-) (radA) [Bacteroides uniformis strain BFG-227]
ATGGCTAAAGAGAAGACGGTTTATGTATGCAGCAACTGCGGACAAGACTCTCCCAAATGGGTAGGCAAGTGTCCGTCGTG
CGGAATGTGGAACACGTATGTGGAAGAGGTGGTACGGAAAGAAGTGGTGAACAAGCGTCCCGTATCGGGCATAGAGACCG
CCAAAGCCAAACCCATAACCCTCCATGAAATTGTAGCCGATGACGAACCGCGCATCGACCTCCATGATGCCGAACTGAAC
CGGGTACTAGGTGGTGGTCTTGTACAAGGATCTCTTGTTTTGATTGGCGGCGAACCGGGCATCGGGAAATCCACCCTGGT
GCTACAAACCGTACTCCGTATACCGGAGAAACGTATCCTCTACGTCTCCGGCGAAGAAAGTACCCGTCAGTTGAAACTGC
GTGCCGACCGTTTGACAAGTGCTTCCAGTGATTGCCTCATCGTGTGCGAAACTTCCCTGGAACAGATTTACGTCCATATC
AAGAACATCCGCCCGGACATCGTCATCATCGACTCCATACAGACGATTTCTACCGAAACCCTTGAATCGTCGCCGGGAAG
CATCGCCCAGGTACGGGAATGCTCCGCCTCCATCCTGCGTTTTGCCAAGGAAACGCATACGGCGGTCATCCTTATCGGGC
ATATCAATAAGGAAGGAAGCATAGCCGGCCCCAAGGTACTGGAACATATCGTGGATACCGTACTCCAGTTCGAGGGCGAC
CAGCACTACATGTACCGCATCCTGCGCAGCATCAAGAACCGCTTCGGAAGCACTGCCGAACTGGGTATTTACGAAATGCG
GCAAGATGGATTACGGCAGGTGAGCAACCCATCCGAACTGCTGCTGAGCCAAGACCATGAAGGTATGAGCGGCATAGCCA
TCGCCTCCGCGATAGAAGGCATCAGACCGTTCCTCATCGAGACGCAGGCATTGGTCAGCAGTGCCGTATATGGTAACCCA
CAACGCTCTGCCACAGGGTTCGACATCCGCCGCATGAATATGCTGCTGGCCGTATTGGAAAAACGTGTAGGCTTCAAACT
GGCACAGAAAGATGTATTTCTCAATATTGCCGGCGGATTGAAAGTGAACGACCCGGCAATAGACCTTGCCGTCATCAGCT
CTATCCTCTCCAGCAACATGGACACGGCCATAGAGCCGGAGGTGTGCATGGCGGGAGAAATAGGTCTGTCAGGTGAAATC
CGTCCAGTGAACCGCATAGAGCAGCGCATCGGAGAAGCAGAGAAACTTGGATTCAAGCGATTCATACTTCCCAAGTATAA
TATGCAAGGACTGAACACGAAGAAGATTAAAATGGAATTGATACCGGTACGGAAGGTGGAAGAAGCATTCCGTGCCCTAT
TCGGATAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (72-219)

• Subunit ChlI of Mg-chelatase (ChlI) (341-427)

3D structure

• AlphaFold DB: A0A078S0N1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	50.763	100	0.512
radA	Streptococcus mitis SK321	47.912	100	0.479
radA	Streptococcus mitis NCTC 12261	47.912	100	0.479
radA	Streptococcus pneumoniae Rx1	47.912	100	0.479
radA	Streptococcus pneumoniae D39	47.912	100	0.479
radA	Streptococcus pneumoniae R6	47.912	100	0.479
radA	Streptococcus pneumoniae TIGR4	47.912	100	0.479