Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   PUW21_RS16345 Genome accession   NZ_CP118167
Coordinates   3103849..3104559 (-) Length   236 a.a.
NCBI ID   WP_134981899.1    Uniprot ID   -
Organism   Bacillus subtilis strain 21855     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3098849..3109559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW21_RS16325 (PUW21_16325) cysK 3098898..3099833 (+) 936 WP_003229237.1 cysteine synthase A -
  PUW21_RS16330 (PUW21_16330) pepV 3099867..3101258 (-) 1392 WP_004399126.1 dipeptidase PepV -
  PUW21_RS16335 (PUW21_16335) pbuO 3101355..3102653 (+) 1299 WP_003229234.1 hypoxanthine/guanine permease PbuO -
  PUW21_RS16340 (PUW21_16340) ythQ 3102695..3103852 (-) 1158 WP_137200938.1 ABC transporter permease -
  PUW21_RS16345 (PUW21_16345) pptA 3103849..3104559 (-) 711 WP_134981899.1 ABC transporter ATP-binding protein Regulator
  PUW21_RS16350 (PUW21_16350) ytzE 3104850..3105071 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  PUW21_RS16355 (PUW21_16355) rsuA 3105193..3105912 (-) 720 WP_017695479.1 pseudouridine synthase -
  PUW21_RS16360 (PUW21_16360) murJ 3105981..3107615 (-) 1635 WP_015251430.1 lipid II flippase MurJ -
  PUW21_RS16365 (PUW21_16365) ytfP 3107818..3109080 (+) 1263 WP_134981923.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26497.51 Da        Isoelectric Point: 5.0066

>NTDB_id=721561 PUW21_RS16345 WP_134981899.1 3103849..3104559(-) (pptA) [Bacillus subtilis strain 21855]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEESEFAHRAQSLLQTFSLDQVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLNDIQDKTGLEGQSLLDCFYKAVQGDRL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=721561 PUW21_RS16345 WP_134981899.1 3103849..3104559(-) (pptA) [Bacillus subtilis strain 21855]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTGGTTGGACTGATCGGAGCTAACGGCGCAGGAAAAAGCACCGCAATCAAGGCTATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTCTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGAGAGTGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCAGGTTAAACATGAGCTGCCTGTCACCTTTTCAAAAGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTGATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAATGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432