Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   PUW21_RS02425 Genome accession   NZ_CP118167
Coordinates   475715..476149 (+) Length   144 a.a.
NCBI ID   WP_274358272.1    Uniprot ID   -
Organism   Bacillus subtilis strain 21855     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 470715..481149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW21_RS02395 (PUW21_02395) ydaD 471362..472222 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  PUW21_RS02400 (PUW21_02400) lyxE 472238..472741 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  PUW21_RS02405 (PUW21_02405) ydaF 472829..473380 (+) 552 WP_014478866.1 GNAT family protein -
  PUW21_RS02410 (PUW21_02410) ydaG 473458..473880 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  PUW21_RS02415 (PUW21_02415) amj 474386..475195 (+) 810 WP_032722918.1 lipid II flippase Amj -
  PUW21_RS02420 (PUW21_02420) ydzA 475240..475530 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  PUW21_RS02425 (PUW21_02425) lrpC 475715..476149 (+) 435 WP_274358272.1 transcriptional regulator LrpC Machinery gene
  PUW21_RS02430 (PUW21_02430) topB 476214..478397 (+) 2184 WP_029317313.1 DNA topoisomerase III -
  PUW21_RS02435 (PUW21_02435) - 478599..479687 (+) 1089 WP_003246551.1 lipoprotein -
  PUW21_RS02440 (PUW21_02440) epsK 479668..480519 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16389.99 Da        Isoelectric Point: 7.6292

>NTDB_id=721460 PUW21_RS02425 WP_274358272.1 475715..476149(+) (lrpC) [Bacillus subtilis strain 21855]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADCER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=721460 PUW21_RS02425 WP_274358272.1 475715..476149(+) (lrpC) [Bacillus subtilis strain 21855]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTTAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTGCGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

99.306

100

0.993