Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NXY11_RS09530 Genome accession   NZ_CP103108
Coordinates   2263449..2264822 (-) Length   457 a.a.
NCBI ID   WP_122352649.1    Uniprot ID   A0A416XJ01
Organism   Parabacteroides faecis strain BFG-489     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2258449..2269822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXY11_RS09510 (NXY11_09510) - 2258893..2259264 (+) 372 WP_258917045.1 hypothetical protein -
  NXY11_RS09515 (NXY11_09515) - 2259274..2260863 (-) 1590 WP_258917046.1 NAD(P)/FAD-dependent oxidoreductase -
  NXY11_RS09520 (NXY11_09520) - 2260890..2261612 (-) 723 WP_183669784.1 hypothetical protein -
  NXY11_RS09525 (NXY11_09525) - 2261609..2263417 (-) 1809 WP_258917047.1 hypothetical protein -
  NXY11_RS09530 (NXY11_09530) radA 2263449..2264822 (-) 1374 WP_122352649.1 DNA repair protein RadA Machinery gene
  NXY11_RS09535 (NXY11_09535) - 2264857..2265813 (-) 957 WP_258917048.1 hypothetical protein -
  NXY11_RS09540 (NXY11_09540) - 2265849..2266391 (-) 543 WP_258917049.1 ferredoxin domain-containing protein -
  NXY11_RS09545 (NXY11_09545) - 2266427..2268547 (-) 2121 WP_258917050.1 KamA family radical SAM protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50275.11 Da        Isoelectric Point: 6.5037

>NTDB_id=721454 NXY11_RS09530 WP_122352649.1 2263449..2264822(-) (radA) [Parabacteroides faecis strain BFG-489]
MAKTKTVYVCSNCGADSPKWIGKCPNCGEWNTYVEEIVATKEPAAKRIIPGITETGKIRPVLLRDITSEEETRIDLKDEE
LNRVLGGGLVKGSLVLIGGEPGIGKSTLVLQTVLRLNNLKTLYVSGEESSRQLKLRADRIAHENPECFILSETNLEQIFI
QARNVQPDLLIIDSIQTIYTEIVESSPGSVSQVRECSAAILKYAKESGVPVLLIGHINKEGSIAGPKVLEHIVDTVLQFE
GDQHYMYRILRSIKNRFGSTAELGIYEMRQDGLREVSNPSELLLTQNHEGLSGVAIAAAIEGIRPFLIETQALVSSAVYG
TPQRSATGFDLRRMNMLLAVLEKRAGFKLIQKDVFLNIAGGLKVNDPAIDLAVISAILSSSLDISIEQGVCMCGEVGLSG
EIRPVNRIEQRILEAEKLGFSRIIIPHNNLKGFDTNKCKIQIVQVRKVEEAFRQLFG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=721454 NXY11_RS09530 WP_122352649.1 2263449..2264822(-) (radA) [Parabacteroides faecis strain BFG-489]
ATGGCTAAGACAAAAACAGTATACGTCTGCTCCAATTGTGGAGCAGACTCTCCTAAATGGATCGGTAAATGTCCGAATTG
CGGCGAGTGGAATACCTATGTGGAAGAGATCGTGGCTACTAAAGAACCTGCGGCAAAACGTATTATTCCCGGTATTACGG
AAACAGGAAAAATCCGTCCGGTCCTGTTGCGTGACATTACATCCGAAGAAGAAACCCGAATCGATTTGAAAGACGAAGAA
CTGAATCGTGTCCTGGGAGGCGGTTTGGTCAAAGGTTCATTGGTACTGATCGGCGGTGAGCCGGGTATCGGTAAGTCTAC
CCTGGTTTTGCAGACTGTTTTGAGGCTGAATAATTTGAAAACATTATATGTATCCGGCGAGGAAAGTAGTCGGCAACTGA
AACTTCGTGCCGATCGTATCGCTCACGAAAATCCGGAATGTTTTATCCTGAGTGAAACGAATCTGGAACAAATATTTATC
CAGGCACGCAACGTACAACCTGATTTATTAATCATAGATTCTATCCAGACAATCTATACGGAGATCGTAGAATCTTCTCC
CGGTAGCGTATCGCAGGTGCGTGAGTGTAGTGCTGCAATCCTGAAATATGCCAAAGAAAGTGGTGTGCCTGTTTTGTTGA
TAGGCCATATTAATAAAGAAGGAAGTATTGCCGGACCGAAAGTATTAGAACATATCGTCGATACGGTTCTTCAGTTCGAA
GGCGATCAGCATTATATGTACCGCATCCTCAGGAGCATTAAAAACCGTTTCGGTAGCACGGCGGAACTGGGTATTTATGA
AATGCGTCAGGATGGCTTGCGTGAAGTCAGCAATCCGTCAGAGTTATTGCTGACACAAAATCATGAAGGGTTGAGCGGTG
TGGCGATTGCTGCAGCCATCGAAGGGATACGTCCTTTCCTGATTGAGACACAGGCATTGGTCAGTTCTGCTGTCTACGGG
ACTCCGCAACGTAGTGCGACCGGATTCGATCTTCGGAGAATGAATATGCTTCTGGCCGTCCTGGAGAAACGTGCCGGATT
TAAGTTGATACAGAAAGACGTCTTTCTTAATATTGCCGGTGGTTTGAAGGTAAACGATCCTGCGATAGATTTAGCTGTTA
TCAGTGCGATCCTTTCATCGAGTCTGGATATCAGTATCGAACAAGGTGTCTGTATGTGTGGTGAAGTCGGTTTGTCGGGA
GAGATCCGTCCTGTCAACCGTATCGAGCAACGTATTCTGGAAGCGGAGAAGTTGGGATTCTCACGTATTATCATTCCTCA
TAATAACCTGAAAGGGTTCGATACCAATAAATGTAAGATACAAATAGTACAGGTACGGAAAGTAGAAGAGGCTTTCCGGC
AATTGTTTGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A416XJ01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.07

100

0.523
  radA Streptococcus mitis SK321

49.237

100

0.495
  radA Streptococcus mitis NCTC 12261

49.127

100

0.492
  radA Streptococcus pneumoniae Rx1

49.127

100

0.492
  radA Streptococcus pneumoniae D39

49.127

100

0.492
  radA Streptococcus pneumoniae R6

49.127

100

0.492
  radA Streptococcus pneumoniae TIGR4

49.127

100

0.492