Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PUV55_RS11350 Genome accession   NZ_CP118165
Coordinates   2235426..2236031 (+) Length   201 a.a.
NCBI ID   WP_015939588.1    Uniprot ID   B8F5Q8
Organism   Glaesserella parasuis strain XP11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2230426..2241031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUV55_RS11325 (PUV55_11325) tal 2230785..2231735 (-) 951 WP_038513375.1 transaldolase -
  PUV55_RS11330 (PUV55_11330) - 2231850..2233121 (-) 1272 WP_015939585.1 AmpG family muropeptide MFS transporter -
  PUV55_RS11335 (PUV55_11335) galE 2233124..2234140 (-) 1017 WP_005712072.1 UDP-glucose 4-epimerase GalE -
  PUV55_RS11340 (PUV55_11340) - 2234205..2234867 (-) 663 WP_005712071.1 pseudouridine synthase -
  PUV55_RS11345 (PUV55_11345) - 2235030..2235359 (+) 330 WP_015939587.1 YbaB/EbfC family nucleoid-associated protein -
  PUV55_RS11350 (PUV55_11350) recR 2235426..2236031 (+) 606 WP_015939588.1 recombination mediator RecR Machinery gene
  PUV55_RS11355 (PUV55_11355) pyrG 2236142..2237776 (+) 1635 WP_160428891.1 glutamine hydrolyzing CTP synthase -
  PUV55_RS11360 (PUV55_11360) serA 2237892..2239124 (-) 1233 WP_005712064.1 phosphoglycerate dehydrogenase -
  PUV55_RS11365 (PUV55_11365) rpiA 2239187..2239846 (-) 660 WP_005712062.1 ribose-5-phosphate isomerase RpiA -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22124.33 Da        Isoelectric Point: 5.8690

>NTDB_id=721433 PUV55_RS11350 WP_015939588.1 2235426..2236031(+) (recR) [Glaesserella parasuis strain XP11]
MQSSPLLENLMEALRVLPGVGPKSAQRMAYHLLQRNRSGGVNLAKALSEAMTHIGHCKSCRTFTEEDECAICQNYRRQIS
GQLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLEEESFQEVILATNPTIEGDATANYIAEM
CSIHNIKVTRIAHGIPVGSELEMVDGTSLSHSFVGRRDISL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=721433 PUV55_RS11350 WP_015939588.1 2235426..2236031(+) (recR) [Glaesserella parasuis strain XP11]
ATGCAAAGTAGCCCTTTACTTGAAAATCTTATGGAAGCCCTGCGTGTATTGCCAGGGGTCGGTCCAAAATCTGCACAACG
TATGGCGTATCATCTTTTACAGCGTAACCGCTCAGGCGGTGTGAATTTAGCTAAAGCATTGAGCGAAGCAATGACTCACA
TTGGACATTGCAAATCTTGCCGAACTTTTACTGAAGAAGATGAGTGTGCTATCTGCCAAAACTACCGCCGCCAAATCAGC
GGACAACTTTGTGTGGTTGAAATGCCTGCAGATATTCAAGCGATTGAACAAACTGGGCAATTTTCAGGGCGTTATTTTGT
ATTAATGGGACATCTATCTCCTTTAGATGGAATAGGACCTCGCGAAATTGGTTTAGATTTATTACAAAAACGCTTAGAAG
AAGAATCTTTTCAAGAAGTGATTCTGGCAACCAATCCAACGATTGAGGGGGATGCGACCGCAAATTATATCGCTGAGATG
TGTTCTATTCACAATATTAAAGTTACTCGTATCGCGCACGGTATTCCTGTCGGAAGTGAATTAGAAATGGTTGACGGAAC
AAGCCTTTCTCATTCATTTGTCGGAAGACGGGATATTTCTTTATAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(42-77)

Toprim domain (Toprim_4)

(82-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F5Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

99.005

0.428
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.5

99.502

0.403