Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   PUV55_RS07380 Genome accession   NZ_CP118165
Coordinates   1492402..1493778 (-) Length   458 a.a.
NCBI ID   WP_274358630.1    Uniprot ID   -
Organism   Glaesserella parasuis strain XP11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1487402..1498778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUV55_RS07360 (PUV55_07360) gpt 1488641..1489120 (+) 480 WP_005714020.1 xanthine phosphoribosyltransferase -
  PUV55_RS07365 (PUV55_07365) - 1489216..1490187 (-) 972 WP_012621529.1 IS110 family transposase -
  PUV55_RS07370 (PUV55_07370) - 1490683..1491654 (+) 972 WP_012621529.1 IS110 family transposase -
  PUV55_RS07375 (PUV55_07375) gmk 1491723..1492349 (+) 627 WP_035491622.1 guanylate kinase -
  PUV55_RS07380 (PUV55_07380) radA/sms 1492402..1493778 (-) 1377 WP_274358630.1 DNA repair protein RadA Machinery gene
  PUV55_RS07385 (PUV55_07385) pilA 1493966..1494430 (+) 465 WP_005711781.1 pilin Machinery gene
  PUV55_RS07390 (PUV55_07390) pilB 1494478..1495863 (+) 1386 WP_160429046.1 GspE/PulE family protein Machinery gene
  PUV55_RS07395 (PUV55_07395) pilC 1495856..1497052 (+) 1197 WP_274358631.1 type II secretion system F family protein Machinery gene
  PUV55_RS07400 (PUV55_07400) - 1497049..1497717 (+) 669 WP_005711775.1 prepilin peptidase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49476.10 Da        Isoelectric Point: 7.6964

>NTDB_id=721413 PUV55_RS07380 WP_274358630.1 1492402..1493778(-) (radA/sms) [Glaesserella parasuis strain XP11]
MAKAPKTAYVCSDCGAEYARWMGQCKACLAWNTISEVRLISAKESKSDRLSGYAGETTGKIQRLSEIDLQEVPRFSSGFY
ELDRVLGGGIVPGSAILIGGHPGAGKSTLLLQVMCGLSQSAPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEHI
CNLADQEKPKLMVIDSIQVMHLADIQSSPGSVAQVRECAAFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASLL
LEGEADSRYRTLRSQKNRFGAVNELGVFAMTEQGLKEVKNPSAIFLSRSEEQTSGSSVMVLWEGTRPLLVEIQALVDHSM
LANPRRVAVGLEQNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLALISSFRNRPLPQDLVVFGEVGL
AGEIRPVPSGQERISEAAKHGFKRAIIPHGNAPKKAIKGMEVFTVKKLSDALDIVNDL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=721413 PUV55_RS07380 WP_274358630.1 1492402..1493778(-) (radA/sms) [Glaesserella parasuis strain XP11]
ATGGCAAAAGCACCAAAAACCGCTTATGTATGTAGTGATTGTGGCGCGGAATATGCTCGTTGGATGGGGCAATGTAAGGC
GTGTTTAGCGTGGAACACCATTAGCGAAGTTCGACTAATTTCGGCAAAAGAGAGCAAAAGTGACCGCTTGAGTGGCTATG
CAGGGGAAACGACAGGCAAAATTCAGCGGCTGTCTGAAATTGATTTGCAGGAAGTGCCACGTTTTAGCAGTGGTTTTTAT
GAACTAGACCGTGTGCTGGGGGGCGGTATTGTACCCGGCAGTGCGATTTTGATCGGCGGACACCCAGGGGCAGGGAAAAG
CACCTTGCTCTTGCAAGTGATGTGCGGTTTGTCGCAAAGTGCGCCAACCCTTTATGTGACTGGAGAAGAGTCGTTACAAC
AGGTGGCAATGCGAGCTAACCGTTTGGGCTTGCCGACTGATAATCTGAAAATGTTATCTGAAACTTCGGTCGAACATATT
TGTAATCTTGCCGATCAGGAAAAACCAAAGCTGATGGTGATTGACTCTATTCAAGTGATGCACCTTGCGGATATTCAATC
TTCCCCTGGCAGTGTGGCTCAGGTGCGTGAATGTGCGGCATTTTTGACACGTTATGCCAAAACACGCCAAGTGGCGATTA
TTATGGTTGGTCACGTAACAAAAGATGGAACTTTAGCAGGCCCTAAAGTGTTAGAACACGCCATTGACGCTTCGTTGTTA
TTGGAAGGGGAGGCGGACTCTCGTTATCGTACCTTACGCAGCCAGAAAAACCGTTTTGGTGCAGTGAACGAACTGGGTGT
ATTTGCAATGACAGAGCAGGGCTTAAAAGAAGTGAAGAACCCTTCGGCGATCTTTTTAAGCCGTAGTGAAGAACAGACTT
CAGGCAGCTCGGTGATGGTATTGTGGGAAGGCACTCGTCCGTTGTTGGTAGAAATTCAGGCATTGGTCGATCACTCAATG
CTTGCCAACCCTCGCCGTGTTGCGGTGGGGCTAGAACAGAACCGCTTATCGCTGTTACTTGCGGTGCTACATCGACACGG
TGGCTTGCAAATGTCTGATCAAGATGTGTTTGTGAATGTGGTCGGTGGGGTAAAAGTCACGGAAACCAGTGCCGACCTAG
CTTTATTGCTGGCATTAATTTCGAGCTTTCGCAACCGTCCTTTACCGCAAGATTTGGTGGTCTTTGGCGAAGTTGGTTTA
GCAGGGGAAATCCGCCCTGTGCCAAGCGGACAAGAGCGAATTAGTGAAGCAGCAAAACACGGCTTTAAACGCGCGATCAT
TCCTCACGGCAACGCTCCGAAAAAAGCAATTAAGGGAATGGAAGTCTTTACCGTGAAGAAATTAAGTGATGCGTTGGATA
TTGTGAATGATCTATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(84-223)

Subunit ChlI of Mg-chelatase (ChlI)

(346-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

47.692

99.345

0.474
  radA Streptococcus mitis NCTC 12261

44.812

98.908

0.443
  radA Streptococcus mitis SK321

44.592

98.908

0.441
  radA Streptococcus pneumoniae Rx1

45.921

93.668

0.43
  radA Streptococcus pneumoniae D39

45.921

93.668

0.43
  radA Streptococcus pneumoniae R6

45.921

93.668

0.43
  radA Streptococcus pneumoniae TIGR4

45.921

93.668

0.43