Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   PUV55_RS02240 Genome accession   NZ_CP118165
Coordinates   454256..456532 (-) Length   758 a.a.
NCBI ID   WP_041603224.1    Uniprot ID   -
Organism   Glaesserella parasuis strain XP11     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 449256..461532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUV55_RS02210 (PUV55_02210) tadA 450925..451461 (+) 537 WP_160428897.1 tRNA adenosine(34) deaminase TadA -
  PUV55_RS02215 (PUV55_02215) yfbV 451443..451877 (-) 435 WP_005711563.1 terminus macrodomain insulation protein YfbV -
  PUV55_RS02220 (PUV55_02220) - 452056..452784 (+) 729 WP_044008972.1 hypothetical protein -
  PUV55_RS02225 (PUV55_02225) - 452793..453356 (+) 564 WP_044008973.1 septation protein A -
  PUV55_RS02230 (PUV55_02230) yciA 453340..453780 (+) 441 WP_005711558.1 acyl-CoA thioester hydrolase YciA -
  PUV55_RS02235 (PUV55_02235) - 453792..454088 (+) 297 WP_005711556.1 YciI family protein -
  PUV55_RS02240 (PUV55_02240) rec2 454256..456532 (-) 2277 WP_041603224.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PUV55_RS02245 (PUV55_02245) uspA 456847..457272 (+) 426 WP_005711551.1 universal stress protein UspA -
  PUV55_RS02250 (PUV55_02250) alaS 457497..460121 (+) 2625 WP_274360008.1 alanine--tRNA ligase -
  PUV55_RS02255 (PUV55_02255) csrA 460185..460370 (+) 186 WP_021109569.1 carbon storage regulator CsrA -
  PUV55_RS02260 (PUV55_02260) galU 460551..461438 (+) 888 WP_021112344.1 UTP--glucose-1-phosphate uridylyltransferase GalU -

Sequence

Protein


Download         Length: 758 a.a.        Molecular weight: 86220.73 Da        Isoelectric Point: 9.1195

>NTDB_id=721390 PUV55_RS02240 WP_041603224.1 454256..456532(-) (rec2) [Glaesserella parasuis strain XP11]
MSIDRVCLMLFFGLLPLIVLPASWLGYVMVFSLALALWGVWRGKLGILLLGGVLAVSYAQIIQLAKKHQEQTAVKVQERV
LVKQILKQQEYQTAVVERANGDYVYVNWQADEPLILEASYNAELVLKPLSARLNDGNFDRQKWYVAQHISATATVKKAVK
VNEQQGLRAIWLDRMREQTAPFATQGLLLALAFGERAWLSQSHWEIFQQTTTAHLIAISGSHIVLVYLLAFWAVKAGQWL
LLRFRCLKAVGLSLYFARGVGWCVALGYSFLAGFQIPTVRAMVAISLVLLVQYARRHYTPWQLWLRGVVLLVVFDPLTLL
SDSFWLSVLAVASLIIWYQAFPLKRFDFVKNMQNRVMKLLLELFHLQLGIWLVFSPIQLSFFDGTSPFALLANLIIVPLY
SFILIPLILFSLLTDNLFQTWWLCHQLAEWGIDWIEPFSHHWLYLSVDQQWGLICLNLLILIGLYGVFQQRFSLYYGLAT
VALPLALWIGFHFVKDTLKPPLVKWVNFDVGQGLAMGLIYQHQGKQKAILYDTGVAWQGGTMAELEILPYLRREGIVVEA
IFVSHDDNDHAGGVLPLLQAYPNARLILSGKNHYSNQVAEPCIGGNQWQFSTIHLEAIYPLQLSERAKNEHSCVLRVSIG
KYRLLLTGDSGIAEERQYASQIGKIDFLQVGHHGSKTSTSQTLLAHTQPTWAIISAGRWNPWKMPNSQVIQRLEQYQVKW
LNTAQVGMIQVDFYSDNYNISTARNRFSPWYQGIGANE

Nucleotide


Download         Length: 2277 bp        

>NTDB_id=721390 PUV55_RS02240 WP_041603224.1 454256..456532(-) (rec2) [Glaesserella parasuis strain XP11]
ATGTCTATTGATCGTGTCTGTTTAATGCTCTTTTTCGGTTTATTGCCGTTGATTGTTCTGCCTGCTTCGTGGCTTGGCTA
TGTGATGGTATTTTCTCTTGCCCTTGCATTATGGGGAGTATGGCGTGGGAAATTGGGGATCTTGCTGTTGGGTGGTGTGT
TAGCGGTGAGTTACGCCCAGATTATACAACTTGCAAAAAAACATCAGGAACAGACCGCTGTTAAGGTGCAAGAGCGGGTG
TTAGTGAAGCAAATTTTAAAACAGCAAGAATATCAAACTGCCGTTGTAGAGCGTGCTAATGGGGACTATGTTTATGTCAA
TTGGCAAGCAGATGAGCCATTGATACTGGAAGCAAGTTATAACGCGGAACTGGTATTGAAGCCTTTGTCCGCTCGCTTAA
ATGATGGCAATTTTGATCGACAAAAATGGTATGTGGCTCAACATATCTCAGCAACAGCTACGGTCAAAAAAGCAGTAAAA
GTGAACGAACAACAAGGCTTGCGTGCAATTTGGCTTGATCGTATGCGAGAACAGACCGCCCCTTTTGCAACGCAAGGGTT
ACTGCTTGCCCTTGCTTTTGGTGAACGGGCTTGGTTAAGTCAAAGCCATTGGGAGATCTTTCAGCAAACAACCACTGCTC
ATTTGATTGCCATTTCAGGCTCGCATATTGTTCTGGTTTATCTGTTAGCCTTTTGGGCGGTGAAAGCTGGGCAGTGGTTA
TTATTGCGATTTCGTTGTCTAAAAGCGGTGGGGTTGTCCTTGTATTTTGCAAGGGGAGTAGGGTGGTGTGTGGCGCTGGG
ATATAGTTTTTTGGCAGGCTTCCAAATTCCAACGGTACGGGCAATGGTGGCGATTTCATTGGTTTTGCTGGTGCAATATG
CTCGTCGTCATTATACGCCTTGGCAGTTATGGCTTCGTGGTGTGGTACTATTAGTCGTCTTTGATCCGCTGACGTTACTG
TCTGATAGCTTTTGGCTCTCTGTTTTGGCTGTTGCTAGCCTAATTATTTGGTATCAGGCTTTTCCACTCAAGCGGTTTGA
TTTTGTCAAAAATATGCAAAATCGAGTGATGAAATTGCTGTTAGAGTTGTTTCATCTGCAGTTAGGCATTTGGCTAGTGT
TCTCGCCTATTCAACTCAGTTTTTTTGATGGCACATCACCTTTCGCTTTATTAGCCAATTTGATCATTGTTCCACTTTAT
AGTTTTATTCTTATCCCATTGATTTTATTTAGTTTATTAACAGATAACCTATTTCAAACTTGGTGGCTTTGCCATCAACT
TGCAGAGTGGGGGATTGATTGGATTGAGCCATTTTCCCATCATTGGCTCTATTTAAGTGTCGATCAACAATGGGGATTAA
TATGCCTTAATTTATTGATTTTAATAGGATTATATGGTGTTTTTCAGCAACGTTTTTCTCTCTATTATGGGTTAGCAACA
GTGGCATTGCCTTTAGCATTGTGGATCGGATTTCATTTTGTAAAAGATACACTTAAACCACCGCTTGTAAAATGGGTGAA
TTTCGATGTGGGGCAAGGGTTGGCAATGGGATTGATTTATCAACACCAAGGTAAACAGAAAGCTATTCTCTATGATACAG
GCGTTGCGTGGCAAGGTGGCACAATGGCGGAATTGGAAATACTGCCCTATTTACGCCGTGAAGGGATAGTAGTCGAAGCT
ATTTTTGTTAGCCACGATGATAACGATCACGCTGGGGGCGTTTTGCCATTACTACAAGCCTACCCAAATGCACGGTTGAT
CCTTTCGGGTAAAAATCATTATAGTAACCAAGTCGCCGAGCCTTGTATAGGAGGCAATCAGTGGCAGTTCAGCACAATAC
ACCTTGAAGCGATTTATCCTTTGCAACTGAGCGAGCGAGCTAAAAATGAACACTCTTGTGTATTACGAGTGTCGATAGGG
AAATATAGATTGCTTCTTACTGGGGATAGTGGGATTGCGGAAGAACGACAATATGCAAGCCAGATCGGTAAGATCGATTT
TCTTCAAGTAGGACACCACGGCAGTAAAACCAGTACCAGCCAAACCTTGTTAGCTCACACACAACCCACTTGGGCGATTA
TTTCGGCTGGGCGTTGGAACCCGTGGAAAATGCCAAATAGTCAAGTTATTCAACGGCTTGAGCAGTATCAGGTGAAGTGG
CTTAATACTGCTCAAGTGGGAATGATCCAAGTCGATTTTTATTCAGATAATTACAACATTTCCACCGCAAGAAACCGCTT
TAGTCCTTGGTATCAGGGGATAGGGGCAAATGAATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(524-685)

Competence protein (Competence)

(191-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

41.494

95.383

0.396