Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   EL334_RS06340 Genome accession   NZ_AP019192
Coordinates   1189579..1190388 (-) Length   269 a.a.
NCBI ID   WP_001289493.1    Uniprot ID   Q9RCS5
Organism   Streptococcus pneumoniae strain ASP0581     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1184579..1195388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL334_RS06325 (ASP0581_11870) - 1187029..1188915 (-) 1887 WP_000150984.1 Eco57I restriction-modification methylase domain-containing protein -
  EL334_RS06330 (ASP0581_11880) - 1188990..1189244 (-) 255 WP_001812387.1 type II toxin-antitoxin system RelE family toxin -
  EL334_RS06335 (ASP0581_11890) relB 1189246..1189488 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  EL334_RS06340 (ASP0581_11900) vicX 1189579..1190388 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  EL334_RS06345 (ASP0581_11910) micB 1190390..1191739 (-) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  EL334_RS06350 (ASP0581_11920) micA 1191732..1192436 (-) 705 WP_000722076.1 response regulator YycF Regulator
  EL334_RS06355 (ASP0581_11930) mutY 1192491..1193666 (-) 1176 WP_000886147.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29916.89 Da        Isoelectric Point: 6.1743

>NTDB_id=72135 EL334_RS06340 WP_001289493.1 1189579..1190388(-) (vicX) [Streptococcus pneumoniae strain ASP0581]
MSEIGFKYSILASGSSGNSFYLETSKKKLLVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVLLTDTGYVSDRMAG
IVENADGYLIEANHDVEILRSGSYAWRLKQRILSDLGHLSNEDGAEAMIRTLGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=72135 EL334_RS06340 WP_001289493.1 1189579..1190388(-) (vicX) [Streptococcus pneumoniae strain ASP0581]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCGTCGGGTTCCAGTGGAAATTCTTTTTATCTGGAAACCTCAAAAAA
GAAGCTTTTAGTAGATGCAGGCTTGTCTGGCAAGAAAATTACCAGTCTGCTAGCTGAAATTAACCGTAAGCCAGAAGACC
TGGATGCCATCTTGATTACCCATGAGCATTCAGATCATATCCATGGAGTAGGCGTTTTGGCTCGCAAGTATGGTATGGAT
CTTTATGCCAATGAAAAGACCTGGCAAGCTATGGAAAATAGTAAATATCTTGGCAAGGTGGATTCTTCGCAAAAGCATAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGAGATATCGACATCGAGAGTTTTGGTGTAAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCCTTTTGACAGATACAGGTTATGTCAGTGACCGTATGGCGGGC
ATTGTCGAAAATGCGGATGGCTATCTTATCGAGGCCAACCATGATGTAGAGATTTTGCGATCAGGTTCTTACGCTTGGCG
ACTCAAACAACGAATCCTATCTGACCTTGGTCACCTTTCTAACGAGGACGGTGCTGAAGCTATGATTCGGACGCTAGGAA
ATCGTACTAAGAAGATTTACCTTGGGCATTTATCTAAGGAAAACAATATCAAGGAACTGGCTCATATGACCATGGTCAAT
CAGCTGGCTCAAGCTGATCTGGGAGTCGGAGTAGACTTTAAGGTTTATGATACCTCACCAGATACCGCAACACCATTGAC
AGAGATATAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9RCS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment