Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   NQK33_RS01835 Genome accession   NZ_CP103055
Coordinates   369561..370745 (+) Length   394 a.a.
NCBI ID   WP_258749861.1    Uniprot ID   -
Organism   Campylobacter coli strain YC3-24     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 364561..375745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQK33_RS01820 (NQK33_01820) - 364768..366486 (+) 1719 WP_052782469.1 hypothetical protein -
  NQK33_RS01825 (NQK33_01825) - 366490..367464 (+) 975 WP_141042903.1 DUF1919 domain-containing protein -
  NQK33_RS01830 (NQK33_01830) - 367537..369564 (+) 2028 WP_258749860.1 capsular polysaccharide biosynthesis protein -
  NQK33_RS01835 (NQK33_01835) kpsS 369561..370745 (+) 1185 WP_258749861.1 capsule biosynthesis protein Regulator
  NQK33_RS01840 (NQK33_01840) - 370812..371933 (+) 1122 WP_002789589.1 DUF829 domain-containing protein -
  NQK33_RS01845 (NQK33_01845) - 371930..373300 (+) 1371 WP_002783822.1 cytochrome P450 -
  NQK33_RS01850 (NQK33_01850) - 373297..373719 (+) 423 WP_002779166.1 hypothetical protein -
  NQK33_RS01855 (NQK33_01855) acpS 373722..374069 (-) 348 WP_002779165.1 holo-ACP synthase -
  NQK33_RS01860 (NQK33_01860) fliL 374069..374605 (-) 537 WP_002779164.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 46632.43 Da        Isoelectric Point: 10.0234

>NTDB_id=721214 NQK33_RS01835 WP_258749861.1 369561..370745(+) (kpsS) [Campylobacter coli strain YC3-24]
MKFSDKIKKEFSGKTVLLLQGPVGTFFHRLAIKMKKNKTKVFKLNFNGGDFLFYPSGKRCKCDEKDLENFYESFFKEKKI
DAIVMYNDCRLIHAKAIKVAKGLGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNILTKESIKEIPGGFKF
MAFSTFLYWLFSFLLAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKFTEKKLNQKIYSLEKKYFLAILQVYNDTQIKYH
YKKSIEEFIEELILSFANHARAKSYLIFKHHPMDRGYRNYSKLINELSQKYHVEGRILYVHDTYLPTLLKKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLAYPKKLQFFWREAHAYKPNPNLVLNFKNYLLNTNQFNGNFYKNSFLSR

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=721214 NQK33_RS01835 WP_258749861.1 369561..370745(+) (kpsS) [Campylobacter coli strain YC3-24]
ATGAAATTTAGCGATAAGATTAAAAAAGAATTTAGCGGTAAAACTGTCTTGCTTTTACAAGGACCTGTAGGGACTTTTTT
TCACCGCCTTGCCATAAAGATGAAAAAAAATAAAACCAAAGTTTTTAAGCTTAATTTTAATGGAGGGGATTTTCTTTTCT
ATCCAAGCGGAAAAAGGTGCAAGTGCGACGAAAAGGATCTTGAAAATTTTTATGAGAGCTTTTTTAAAGAAAAAAAGATA
GATGCTATTGTGATGTATAATGATTGCCGTTTGATCCATGCAAAAGCTATCAAAGTAGCTAAGGGGCTTGGCATTGGTAT
TTGGATTTTTGAAGAGGGGTATTTAAGGCCTTATTGTATCACTTTTGAAAAAGATGGGGTCAATGCAAACTCCTCCTTGC
CTCGCGATAAAAATTTCTATCTTTCTTGCAATATCCTTACAAAAGAAAGCATAAAAGAAATTCCAGGTGGTTTTAAATTT
ATGGCCTTTAGTACTTTTCTGTATTGGCTTTTTTCTTTTCTGCTAGCTCCTTTTTTTAACAACAAGCTTCATCATCGCAC
CTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCTTTATATAGAAAATACCTTTATAAATTCACAGAAAAAAAACTCA
ATCAAAAAATTTATAGCCTTGAAAAAAAGTATTTTTTGGCTATTTTGCAAGTTTATAATGATACGCAAATTAAGTACCAT
TATAAAAAAAGCATAGAAGAATTTATAGAAGAGCTTATCCTTTCTTTTGCAAATCACGCAAGAGCAAAGTCTTATCTTAT
CTTTAAACATCATCCTATGGATAGGGGATATAGAAATTATTCTAAACTTATAAATGAGCTAAGTCAAAAATACCATGTAG
AAGGAAGAATTTTATATGTGCACGATACTTATTTACCCACTCTTTTAAAAAAGGCTTTGGGTTGCATCACGATTAATTCT
ACAGTGGGTTTAAGTGCTATTTTGGAGGGCTGTCCTACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCCTAGC
TTATCCTAAAAAACTCCAATTTTTTTGGCGCGAAGCTCATGCTTACAAACCCAATCCTAATTTGGTTTTAAATTTCAAAA
ACTATCTTTTAAATACAAATCAATTCAACGGCAATTTTTACAAAAATTCTTTTTTAAGTCGATAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

87.563

100

0.876