Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   JQN54_RS11025 Genome accession   NZ_AP024305
Coordinates   2037753..2038562 (-) Length   269 a.a.
NCBI ID   WP_011229053.1    Uniprot ID   Q5SGW1
Organism   Thermus thermophilus strain HB5008     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2032753..2043562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN54_RS10995 (TthHB5008_21850) rsmI 2032914..2033708 (-) 795 WP_203971377.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JQN54_RS11000 (TthHB5008_21860) - 2033710..2034204 (-) 495 WP_011173970.1 hypothetical protein -
  JQN54_RS11005 (TthHB5008_21870) - 2034268..2034795 (-) 528 WP_011173971.1 inorganic diphosphatase -
  JQN54_RS11010 (TthHB5008_21880) - 2034828..2035454 (+) 627 WP_011173972.1 YcxB family protein -
  JQN54_RS11015 (TthHB5008_21890) comEA 2035427..2035735 (+) 309 WP_024119555.1 helix-hairpin-helix domain-containing protein Machinery gene
  JQN54_RS11020 (TthHB5008_21900) comA/comEC 2035732..2037765 (+) 2034 WP_203971379.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  JQN54_RS11025 (TthHB5008_21910) spo0J 2037753..2038562 (-) 810 WP_011229053.1 ParB/RepB/Spo0J family partition protein Regulator
  JQN54_RS11030 (TthHB5008_21920) soj 2038546..2039295 (-) 750 WP_203971381.1 chromosome-partitioning ATPase Soj -
  JQN54_RS11035 (TthHB5008_21930) rsmG 2039289..2040038 (-) 750 WP_203971383.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  JQN54_RS11040 (TthHB5008_21940) mnmG 2040038..2041831 (-) 1794 WP_203971385.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29760.65 Da        Isoelectric Point: 10.1293

>NTDB_id=72118 JQN54_RS11025 WP_011229053.1 2037753..2038562(-) (spo0J) [Thermus thermophilus strain HB5008]
MSRKPSGLGRGLEALLPKTGAGVVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQGDGYELVAGERR
YRAALMAGLQEVPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRLLQL
PPEALEALERGEITAGHARALLMLEPEDRLWGLKEILEKGLSVRQAEALRERLAMAPKRPAEPSPLSLELSRHLGLPVRV
VGGKKGKVVIQYRSLEELEALLRRLGYQA

Nucleotide


Download         Length: 810 bp        

>NTDB_id=72118 JQN54_RS11025 WP_011229053.1 2037753..2038562(-) (spo0J) [Thermus thermophilus strain HB5008]
GTGTCCAGGAAGCCTAGCGGTCTCGGGCGGGGCCTCGAGGCCCTGCTCCCCAAGACGGGGGCGGGGGTGGTCCGCCTGCC
CCTCGCCAGCATCCGCCCCAACCCCCGCCAGCCGCGGAAGCGGTTCGCCGAGGAGAGCCTCAAGGAGCTCGCCGACTCCA
TCCGGGAGAAGGGCCTCCTCCAGCCCCTCCTCGTCCGGCCCCAGGGGGACGGGTACGAGCTCGTGGCGGGGGAAAGGCGC
TACCGGGCCGCCCTCATGGCGGGGCTTCAGGAGGTCCCCGCCGTGGTCAAGGACCTCACGGACCGGGAGGCCTTGGAGCT
CGCCCTGGTGGAGAACCTCCAGCGGGAGGACCTCTCCCCCGTGGAGGAGGCCCGGGGCTACCAGGCCCTTTTGGAGATGG
GCCTCACCCAGGAGGAGGTGGCCCGGCGGGTGGGCAAGGCCCGCTCCACCGTGGCCAACGCCCTCAGGCTCCTCCAGCTT
CCCCCCGAGGCCCTCGAGGCCCTGGAGCGGGGGGAGATCACCGCGGGCCACGCCCGGGCCCTCCTCATGCTGGAGCCCGA
GGACCGGCTCTGGGGGCTTAAGGAGATCCTGGAGAAGGGGCTTTCCGTGCGGCAGGCGGAGGCCCTGAGGGAGCGCCTGG
CCATGGCCCCTAAGCGCCCCGCTGAGCCCTCCCCCCTCTCCCTGGAGCTCTCCCGCCACCTGGGCCTGCCCGTGAGGGTG
GTGGGGGGGAAGAAGGGCAAGGTGGTGATCCAGTACCGCTCCTTGGAGGAGCTGGAGGCCCTTCTGCGGCGCCTCGGCTA
CCAGGCGTAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(162-210)

ParB/Sulfiredoxin domain (ParB_N)

(26-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5SGW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.6

92.937

0.387