Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NV391_RS08125 Genome accession   NZ_CP103039
Coordinates   1599960..1601333 (-) Length   457 a.a.
NCBI ID   WP_057867346.1    Uniprot ID   -
Organism   Companilactobacillus crustorum strain X66     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1594960..1606333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NV391_RS08105 (NV391_08120) - 1595168..1595581 (-) 414 WP_057867311.1 Mini-ribonuclease 3 -
  NV391_RS08110 (NV391_08125) cysS 1595574..1596983 (-) 1410 WP_057867310.1 cysteine--tRNA ligase -
  NV391_RS08115 (NV391_08130) gltX 1597198..1598694 (-) 1497 WP_274764683.1 glutamate--tRNA ligase -
  NV391_RS08120 (NV391_08135) - 1598675..1599946 (-) 1272 WP_057867308.1 PIN/TRAM domain-containing protein -
  NV391_RS08125 (NV391_08140) radA 1599960..1601333 (-) 1374 WP_057867346.1 DNA repair protein RadA Machinery gene
  NV391_RS08130 (NV391_08145) - 1601353..1601895 (-) 543 WP_057867307.1 dUTP diphosphatase -
  NV391_RS08135 (NV391_08150) - 1602027..1602329 (+) 303 WP_075887431.1 GNAT family N-acetyltransferase -
  NV391_RS08140 (NV391_08155) rpiA 1602330..1603019 (+) 690 WP_075887430.1 ribose-5-phosphate isomerase RpiA -
  NV391_RS08145 (NV391_08160) - 1603033..1604376 (+) 1344 WP_274764685.1 aminopeptidase C -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49895.29 Da        Isoelectric Point: 7.1402

>NTDB_id=721140 NV391_RS08125 WP_057867346.1 1599960..1601333(-) (radA) [Companilactobacillus crustorum strain X66]
MAKAKTKFVCQNCGYVSPKYLGRCPNCGVWNQMVEEVDHPEAAKASATPSRRVSDVESKPVKISEVSFEKEPRVKTDLGE
LNRVLGGGIVPGSLILIGGDPGIGKSTLLTQVSGQLAKDGGKVLYVSGEESASQIKMRADRLGITGDNLYLYPQTDMSYI
RQTIDEMHPDYLIIDSVQTMDEPEITSAVGSISQIREVTAELMNIAKQQNVTVFVVGHVTKGGAIAGPKILEHMVDTVLY
FEGDTHHSYRILRSVKNRFGSTNEIGIFEMRTKGLVEVANPSEIFLEERLVNANGSAVVVSMEGTRPILVEIQSLITPTI
FGNAKRTATGLDHNRVSVIMAVLEKRGNLMLQNQDAYLKSTGGVKLDEPAIDLALAMSIASSYKNTGIPGTDCFVGEVGL
TGEVRRVNRIDQRVNEAEKLGFKRIFIPKNNLGDWSKHNKIQIIGVSTVLDAMNKIF

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=721140 NV391_RS08125 WP_057867346.1 1599960..1601333(-) (radA) [Companilactobacillus crustorum strain X66]
TTGGCTAAAGCTAAAACAAAATTTGTTTGTCAAAACTGTGGGTATGTTTCTCCCAAATATTTAGGACGTTGTCCTAATTG
TGGTGTCTGGAATCAAATGGTAGAAGAAGTTGATCATCCAGAGGCTGCCAAAGCAAGCGCTACACCAAGTCGCCGTGTCA
GTGATGTAGAATCTAAACCAGTTAAGATTTCGGAGGTCTCTTTTGAAAAAGAACCTCGGGTTAAAACTGATTTAGGTGAG
TTGAATCGAGTTTTAGGTGGAGGCATTGTTCCAGGATCATTAATTTTAATCGGTGGTGATCCTGGTATTGGTAAATCGAC
CTTATTAACGCAGGTTTCAGGACAATTAGCTAAAGACGGTGGCAAAGTACTTTATGTTTCAGGTGAAGAGAGTGCTTCAC
AGATTAAGATGCGGGCAGACCGATTGGGAATTACTGGCGATAATTTATATCTATATCCTCAGACTGATATGAGTTATATT
CGTCAAACAATTGATGAAATGCATCCTGATTATTTGATTATTGATTCAGTTCAAACTATGGACGAACCAGAAATTACTTC
AGCAGTTGGAAGTATTTCACAAATTCGTGAGGTTACAGCTGAATTAATGAATATTGCTAAGCAACAAAACGTTACAGTTT
TTGTTGTTGGACATGTTACAAAAGGTGGGGCTATTGCTGGTCCTAAGATTTTGGAGCATATGGTAGATACAGTGCTGTAT
TTTGAGGGCGATACGCACCACAGTTATCGAATTTTACGGTCGGTTAAAAATCGTTTTGGCTCAACCAATGAAATCGGTAT
TTTTGAAATGCGAACTAAGGGATTGGTTGAAGTTGCTAATCCTTCAGAGATATTTTTAGAAGAACGTTTGGTAAATGCCA
ATGGTTCTGCAGTAGTTGTATCTATGGAAGGTACAAGACCTATTTTGGTCGAGATTCAATCACTAATTACCCCAACTATT
TTTGGAAATGCCAAACGGACGGCAACTGGATTAGATCATAATCGGGTGTCTGTAATCATGGCAGTTCTTGAAAAGCGGGG
TAATTTAATGCTTCAGAATCAAGATGCCTATCTAAAATCAACTGGTGGCGTTAAGTTGGATGAACCTGCAATTGATTTGG
CTTTGGCAATGTCAATTGCTTCTAGCTATAAAAATACAGGTATTCCGGGAACTGATTGTTTTGTCGGTGAAGTTGGCTTG
ACTGGTGAAGTAAGACGGGTCAATCGAATTGATCAACGGGTTAATGAGGCTGAAAAATTAGGCTTCAAACGTATTTTTAT
ACCTAAAAATAACTTGGGCGATTGGTCTAAGCATAATAAGATTCAGATAATCGGCGTCAGTACAGTTTTAGATGCAATGA
ATAAAATTTTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(62-223)

Subunit ChlI of Mg-chelatase (ChlI)

(367-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

64.114

100

0.641
  radA Streptococcus mitis NCTC 12261

64.114

100

0.641
  radA Streptococcus pneumoniae Rx1

64.114

100

0.641
  radA Streptococcus mitis SK321

64.114

100

0.641
  radA Streptococcus pneumoniae R6

64.114

100

0.641
  radA Streptococcus pneumoniae TIGR4

64.114

100

0.641
  radA Bacillus subtilis subsp. subtilis str. 168

64.018

99.125

0.635