Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NV391_RS07760 Genome accession   NZ_CP103039
Coordinates   1533518..1533787 (-) Length   89 a.a.
NCBI ID   WP_232230814.1    Uniprot ID   -
Organism   Companilactobacillus crustorum strain X66     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1534168..1535096 1533518..1533787 flank 381


Gene organization within MGE regions


Location: 1533518..1535096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NV391_RS07760 (NV391_07775) comFC 1533518..1533787 (-) 270 WP_232230814.1 ComF family protein Machinery gene
  NV391_RS07765 (NV391_07780) - 1534168..1535096 (-) 929 Protein_1497 IS30-like element ISLpl1 family transposase -

Sequence

Protein


Download         Length: 89 a.a.        Molecular weight: 10497.33 Da        Isoelectric Point: 10.1013

>NTDB_id=721138 NV391_RS07760 WP_232230814.1 1533518..1533787(-) (comFC) [Companilactobacillus crustorum strain X66]
MYELYADIFDLKLLLKKNDADKPQAQKNRSERLKTPQTFLPLPELMKIQKNQRILILDDIYTTGRTLMHAHDIFLRAGFK
NICTFSLSR

Nucleotide


Download         Length: 270 bp        

>NTDB_id=721138 NV391_RS07760 WP_232230814.1 1533518..1533787(-) (comFC) [Companilactobacillus crustorum strain X66]
GTGTATGAACTTTATGCTGATATCTTTGATTTAAAATTACTTTTAAAGAAAAATGATGCTGATAAGCCACAAGCACAGAA
GAATCGAAGCGAGCGTTTGAAGACGCCACAGACTTTTTTGCCATTGCCAGAATTGATGAAGATTCAAAAAAATCAAAGAA
TTTTAATCTTGGATGACATTTATACAACCGGTCGAACTTTGATGCATGCTCATGATATATTTTTGAGAGCTGGATTTAAA
AATATTTGTACATTTTCACTCTCAAGATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Latilactobacillus sakei subsp. sakei 23K

48.864

98.876

0.483
  comFC Lactococcus lactis subsp. cremoris KW2

44.737

85.393

0.382