Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PUW52_RS07540 Genome accession   NZ_CP118078
Coordinates   1513953..1515611 (-) Length   552 a.a.
NCBI ID   WP_024052832.1    Uniprot ID   A0A412PNH5
Organism   Streptococcus anginosus strain VSI16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1508953..1520611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW52_RS07515 (PUW52_07515) - 1509452..1510405 (+) 954 WP_024052827.1 iron chelate uptake ABC transporter family permease subunit -
  PUW52_RS07520 (PUW52_07520) - 1510398..1511360 (+) 963 WP_024052828.1 iron chelate uptake ABC transporter family permease subunit -
  PUW52_RS07525 (PUW52_07525) - 1511362..1512114 (+) 753 WP_024052829.1 ATP-binding cassette domain-containing protein -
  PUW52_RS07530 (PUW52_07530) - 1512138..1513112 (+) 975 WP_024052830.1 siderophore ABC transporter substrate-binding protein -
  PUW52_RS07535 (PUW52_07535) - 1513175..1513906 (-) 732 WP_024052831.1 metallophosphoesterase -
  PUW52_RS07540 (PUW52_07540) recN 1513953..1515611 (-) 1659 WP_024052832.1 DNA repair protein RecN Machinery gene
  PUW52_RS07545 (PUW52_07545) - 1515619..1516050 (-) 432 WP_003031395.1 arginine repressor -
  PUW52_RS07550 (PUW52_07550) - 1516043..1516858 (-) 816 WP_024052833.1 TlyA family RNA methyltransferase -
  PUW52_RS07555 (PUW52_07555) - 1516824..1517726 (-) 903 WP_024052834.1 polyprenyl synthetase family protein -
  PUW52_RS07560 (PUW52_07560) - 1517723..1517935 (-) 213 WP_003030175.1 exodeoxyribonuclease VII small subunit -
  PUW52_RS07565 (PUW52_07565) xseA 1517913..1519253 (-) 1341 WP_024052835.1 exodeoxyribonuclease VII large subunit -
  PUW52_RS07570 (PUW52_07570) - 1519443..1519619 (-) 177 WP_224784532.1 hypothetical protein -
  PUW52_RS07575 (PUW52_07575) - 1519829..1520176 (-) 348 WP_224784533.1 TraX family protein -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62324.61 Da        Isoelectric Point: 4.5608

>NTDB_id=721024 PUW52_RS07540 WP_024052832.1 1513953..1515611(-) (recN) [Streptococcus anginosus strain VSI16]
MLLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSRATTDVIRHGASKAEIEGLFAIEQSKALVEIF
EQQGLDMTEELIIRREIFQNGRSVSRINGQMVNLSVLRAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGADAFFKLKAD
YQQTFDQYRQLRKQILTIQKNQEENKARIDMLEYQIAEIEAANLKASEDLALNQERDKLLNHKQIADTLTNAYAMLDDEE
FSSLANIRSAMNDMEAIEDYDATYKEIATNLSESYYVLEDVTKRLEDILEDLDFDGGRLLEVESRLDLIYSITRKYGGQV
DDVLAYFEQISKEYALLTGKNLSSDDLNKELKKLEKDLVSLASSLSQARHELAQQLEAEIQQELQDLYMEKANFRVQFIK
GKFSRDGNEHVEFYISTNPGEDYKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SNGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSTVRLLSNDERVEEIAKMLAGENVTQAALTQARELLKK

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=721024 PUW52_RS07540 WP_024052832.1 1513953..1515611(-) (recN) [Streptococcus anginosus strain VSI16]
ATGTTACTTGAAATTTCCATTAAAAATTTTGCAATTATTGAAGAGATTTCCCTCAATTTTGAGCAAGGCATGACCGTTTT
GACTGGTGAAACAGGGGCTGGAAAGTCTATTATTATTGATGCTATGAACATGATGCTAGGAAGCCGCGCGACAACAGATG
TGATTCGTCACGGTGCATCAAAAGCAGAGATTGAAGGGCTTTTTGCAATTGAGCAGAGTAAGGCTTTGGTTGAAATTTTT
GAGCAGCAAGGGCTTGATATGACAGAGGAGCTGATTATTCGGCGGGAAATTTTTCAAAATGGGCGTAGTGTCAGTCGTAT
TAATGGTCAAATGGTTAATTTGTCTGTCTTGCGAGCTGTTGGACAGCATTTGGTGGATATTCACGGTCAACACGATCAAG
AAGAACTCATGCGACCGCAGCTGCATATTGCCATGTTGGACGAGTTTGGAGCTGACGCATTTTTCAAGCTCAAAGCTGAT
TATCAACAGACTTTTGACCAGTATCGTCAGTTGCGTAAGCAGATCTTAACAATTCAAAAGAATCAAGAAGAAAATAAAGC
GCGGATTGACATGCTGGAATATCAAATTGCAGAGATTGAAGCAGCTAATTTAAAAGCTAGCGAAGATTTAGCTTTAAACC
AAGAGCGTGATAAGTTACTCAATCATAAGCAGATTGCGGACACTTTGACAAATGCCTATGCCATGCTGGATGATGAAGAA
TTTTCTAGTTTAGCGAATATTCGTTCTGCCATGAATGACATGGAAGCTATTGAAGACTATGACGCCACTTACAAAGAAAT
TGCGACCAACCTTTCTGAATCTTACTATGTGTTGGAAGATGTGACAAAGCGTTTGGAGGATATTCTAGAAGACTTGGATT
TTGATGGTGGCCGTCTCTTAGAAGTAGAAAGTCGCCTAGATTTAATCTATAGTATTACTCGCAAATACGGCGGTCAAGTA
GATGATGTCTTAGCTTATTTTGAGCAGATTTCTAAAGAATATGCTCTACTTACTGGGAAAAATCTTTCATCAGATGATTT
GAACAAAGAGCTGAAAAAGCTGGAAAAAGACTTGGTTTCTCTAGCAAGCAGTCTTAGTCAGGCTCGGCACGAATTAGCCC
AGCAGTTAGAAGCAGAGATTCAGCAAGAACTGCAAGACCTCTATATGGAAAAGGCGAATTTTCGAGTTCAATTTATCAAG
GGAAAATTTAGCCGCGATGGGAATGAACACGTTGAATTTTATATTTCGACTAATCCCGGTGAAGATTACAAACCGCTCGT
TAAGGTTGCTTCAGGTGGTGAATTGTCTCGTTTAATGTTGGCAATCAAGTCTGCTTTTTCTCGCAAGGAAGGCAAAACCA
GCATTGTCTTTGATGAAGTAGATACAGGTGTATCGGGACGTGTTGCACAAGCTATTGCTCAAAAGATTCATAAAATTGGC
TCGAACGGACAAGTCCTCGCAATTTCGCACCTACCACAAGTGATTGCCATTGCAGATTATCAATTTTTCATTGAGAAAAT
ATCTGATGAGCATTCGACCGTTTCAACTGTTCGCTTGTTATCAAATGATGAGCGTGTCGAAGAAATTGCCAAAATGTTGG
CGGGCGAAAATGTGACCCAAGCAGCCCTCACGCAGGCTAGAGAGCTCTTGAAAAAATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A412PNH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.211

100

0.457