Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   B7R44_RS15090 Genome accession   NZ_AP019189
Coordinates   2952976..2953605 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain M217     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2947976..2958605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B7R44_RS15075 (MYEC217_27700) helD 2948218..2950272 (-) 2055 WP_001295354.1 DNA helicase IV -
  B7R44_RS15080 (MYEC217_27710) yccF 2950395..2950841 (+) 447 WP_001261235.1 YccF domain-containing protein -
  B7R44_RS15085 (MYEC217_27720) yccS 2950851..2953013 (+) 2163 WP_000875058.1 YccS family putative transporter -
  B7R44_RS15090 (MYEC217_27730) sxy/tfoX 2952976..2953605 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  B7R44_RS15095 (MYEC217_27740) sulA 2953824..2954333 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  B7R44_RS15100 (MYEC217_27760) ompA 2954690..2955730 (+) 1041 WP_000750416.1 porin OmpA -
  B7R44_RS15105 (MYEC217_27770) matP 2955806..2956258 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  B7R44_RS15110 (MYEC217_27780) ycbZ 2956444..2958204 (+) 1761 WP_000152888.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=72102 B7R44_RS15090 WP_000839153.1 2952976..2953605(-) (sxy/tfoX) [Escherichia coli strain M217]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=72102 B7R44_RS15090 WP_000839153.1 2952976..2953605(-) (sxy/tfoX) [Escherichia coli strain M217]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment