Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   NW953_RS02495 Genome accession   NZ_CP102975
Coordinates   536573..537142 (+) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 16CS0209     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 531573..542142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW953_RS02470 (NW953_02470) cysE 532786..533433 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  NW953_RS02475 (NW953_02475) cysS 533417..534817 (+) 1401 WP_124374798.1 cysteine--tRNA ligase -
  NW953_RS02480 (NW953_02480) - 534810..535214 (+) 405 WP_078370643.1 Mini-ribonuclease 3 -
  NW953_RS02485 (NW953_02485) rlmB 535222..535968 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NW953_RS02490 (NW953_02490) - 535968..536492 (+) 525 WP_000664738.1 NYN domain-containing protein -
  NW953_RS02495 (NW953_02495) sigH 536573..537142 (+) 570 WP_000872876.1 RNA polymerase sigma factor Regulator
  NW953_RS02500 (NW953_02500) rpmG 537257..537400 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  NW953_RS02505 (NW953_02505) secE 537456..537638 (+) 183 WP_176439699.1 preprotein translocase subunit SecE -
  NW953_RS02510 (NW953_02510) nusG 537651..538199 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  NW953_RS02515 (NW953_02515) rplK 538380..538802 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  NW953_RS02520 (NW953_02520) rplA 539010..539702 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  NW953_RS02525 (NW953_02525) rplJ 539974..540474 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  NW953_RS02530 (NW953_02530) rplL 540517..540885 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  NW953_RS02535 (NW953_02535) - 541060..541668 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=720982 NW953_RS02495 WP_000872876.1 536573..537142(+) (sigH) [Staphylococcus aureus strain 16CS0209]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=720982 NW953_RS02495 WP_000872876.1 536573..537142(+) (sigH) [Staphylococcus aureus strain 16CS0209]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAACGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTAA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984