Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   PUW52_RS02045 Genome accession   NZ_CP118078
Coordinates   387294..387896 (-) Length   200 a.a.
NCBI ID   WP_024052121.1    Uniprot ID   A0A412PNK3
Organism   Streptococcus anginosus strain VSI16     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 382294..392896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW52_RS02030 (PUW52_02030) nadE 382514..383338 (+) 825 WP_024052124.1 ammonia-dependent NAD(+) synthetase -
  PUW52_RS02035 (PUW52_02035) pepC 383486..384823 (+) 1338 WP_024052123.1 aminopeptidase C -
  PUW52_RS02040 (PUW52_02040) pbp1a 385133..387301 (-) 2169 WP_024052122.1 penicillin-binding protein PBP1A -
  PUW52_RS02045 (PUW52_02045) recU 387294..387896 (-) 603 WP_024052121.1 Holliday junction resolvase RecU Machinery gene
  PUW52_RS02050 (PUW52_02050) - 387966..388493 (+) 528 WP_024052120.1 DUF1273 domain-containing protein -
  PUW52_RS02055 (PUW52_02055) gpsB 388563..388904 (+) 342 WP_024052119.1 cell division regulator GpsB -
  PUW52_RS02065 (PUW52_02065) - 389340..390494 (+) 1155 WP_042754017.1 class I SAM-dependent RNA methyltransferase -
  PUW52_RS02070 (PUW52_02070) - 390507..392003 (+) 1497 WP_024052116.1 cell division site-positioning protein MapZ family protein -
  PUW52_RS02075 (PUW52_02075) ahpC 392106..392672 (+) 567 WP_024052115.1 alkyl hydroperoxide reductase subunit C -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23129.86 Da        Isoelectric Point: 10.1006

>NTDB_id=720973 PUW52_RS02045 WP_024052121.1 387294..387896(-) (recU) [Streptococcus anginosus strain VSI16]
MVNYPHKVPSRNSLRLPKKKSVDFANRGMSFEKMINETNDYYLSHDLAVIHKKPTPIQIVKVDYPRRSRAKIVEAYFRQA
STTDYSGVYQGHYIDFEAKETHQKASMPMKNFHAHQIKHMEQVVKQGGICFVLLHFSALKLTYLLPAPYLINFFKIDKGK
KSMPLDYIQKHGYSISQNGLPSIPYLEIIQQNLLGGKINE

Nucleotide


Download         Length: 603 bp        

>NTDB_id=720973 PUW52_RS02045 WP_024052121.1 387294..387896(-) (recU) [Streptococcus anginosus strain VSI16]
ATGGTCAACTATCCACATAAAGTTCCCTCTCGAAATTCATTAAGACTTCCCAAAAAGAAGTCCGTTGACTTTGCGAATCG
GGGAATGTCGTTTGAAAAAATGATCAATGAAACGAATGATTATTATCTTAGTCACGATTTAGCGGTCATTCACAAGAAAC
CAACCCCTATTCAGATTGTAAAAGTGGATTATCCCAGACGTAGTCGGGCAAAAATTGTTGAAGCCTACTTTCGACAAGCC
TCTACAACAGACTATTCTGGTGTCTATCAAGGACATTATATAGATTTTGAAGCAAAAGAAACACATCAAAAGGCTTCCAT
GCCGATGAAAAATTTTCATGCTCATCAAATCAAGCACATGGAACAAGTCGTCAAACAAGGAGGAATTTGTTTCGTTTTAT
TGCACTTTTCAGCCTTAAAATTGACATATCTGCTTCCTGCTCCTTATTTAATTAACTTCTTCAAGATTGACAAGGGGAAA
AAGTCCATGCCACTTGACTACATTCAAAAGCATGGATATTCTATCTCACAGAATGGTCTTCCTAGCATTCCGTATCTTGA
AATCATTCAACAAAATTTACTAGGTGGTAAAATAAATGAATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(27-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A412PNK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.746

100

0.51