Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexA   Type   Machinery gene
Locus tag   PUW49_RS03635 Genome accession   NZ_CP118054
Coordinates   713417..717097 (+) Length   1226 a.a.
NCBI ID   WP_070811255.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 708417..722097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW49_RS03625 (PUW49_03625) - 708814..710028 (+) 1215 WP_070811252.1 ABC transporter permease -
  PUW49_RS03630 (PUW49_03630) rexB 710148..713420 (+) 3273 WP_024051908.1 ATP-dependent nuclease subunit B Machinery gene
  PUW49_RS03635 (PUW49_03635) rexA 713417..717097 (+) 3681 WP_070811255.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  PUW49_RS03640 (PUW49_03640) glgB 717617..719527 (+) 1911 WP_024051906.1 1,4-alpha-glucan branching protein GlgB -
  PUW49_RS03645 (PUW49_03645) - 719531..720673 (+) 1143 WP_024051905.1 glucose-1-phosphate adenylyltransferase -
  PUW49_RS03650 (PUW49_03650) glgD 720663..721802 (+) 1140 WP_264349105.1 glucose-1-phosphate adenylyltransferase subunit GlgD -

Sequence


Protein


Download         Length: 1226 a.a.        Molecular weight: 141275.98 Da        Isoelectric Point: 5.1853

>NTDB_id=720883 PUW49_RS03635 WP_070811255.1 713417..717097(+) (rexA) [Streptococcus anginosus strain VSI37]
MRQIPFLSQEEIYALQDQEAQSDKAQKRTPDQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVRIDQLFISTFT
VKAASELKERLEKELSKVLKATDDEELKQHLAQQLADIPNADIGTMDSFTQKVLNKYGYLLELAPNFRILQNASEQLLLQ
NEVFEQVFEEFYQSDQAILFKKLVKNFTGQRKDLLGFREQIYKIYAFLQSTSSPIEYLEQDFLKAYAHADFQEEKAQLLA
KTKEALFDLEEFFQYHLANEAKEFPKAKYLENVQRVLDCLASLQGHSSEEAYLTTLNNIVEISRASNGKALTNSGRKEEL
KEIINAYNEKRKEKIQVLRDLADQFYRFEFQVTYHEEAKEILLVLQQFMKSFVTSYLQRKKEENAFEFADISHFAIQILE
EFPDVRHFYRTKYHEVMVDEYQDTNHTQERMLELLSNGGNRFMVGDIKQSIYRFRQADPQIFNEKFKTYQDDSQQGKLIV
LKENFRSHVEVLEATNDVFKRLMDEEVGEIDYNETHYLVAGNPAKKAPNPQYQTEFLIYDGTLETDNEENDKDVSSVSAG
EVALVIKEIIRLHNEENVPFEDMTLLTASRTRNDVILSEFAKYGIPVVSDGGEDNYLQSVEVMVMLDTLRTINNPFNDYA
LVALLKSPMFTFTEDELARLALQKKVTEATYVTHQENLYEKLKNSLSGNGQHPELITPPLLKKIQQFQEILLDWREFAKI
NSLYDLLWKIYQDRFYYDYVGALPNGAGRQANLYALTLRANDYEKMSFKGLSRFIGMIDKILETHNDLASVVVAAPKHAV
RLMTVHKSKGLEFKYVFLLNMDKVFNRKDSSSALIISRQNGVGIKYVADVVVDVADELAPNHVRLSIDTLPYEQNEREIH
LASISEQMRLLYVAMTRAERKLYLVGKGRQESLEKKTFPAPENGRLAASIRQTMTSFQDWIWALQTVFEKDDLAFSTQFV
TDSDLTSEKIGQLKLKERIVEENLAHNRQSEDIRRALDILENVDRLNTQYRAAIHLPSVRTPSQIKKFYEPVMDTDGVEI
MEKKTPDFIGKTSFELPDFAKKAPVIGAQIGSAVHELMQRIPLNQLPTIAILKKILAQVQAEETVKKKIDLQKIASFFET
ELGQLLLKQADKVYREAPFAMLKQDQASGQDFVVRGILDGYLLLADRIVLFDYKTDQYTNPSELVERYQAQLALYAEALR
RSYGIEKIEKYLVLLGGVQLQVVKVD

Nucleotide


Download         Length: 3681 bp        

>NTDB_id=720883 PUW49_RS03635 WP_070811255.1 713417..717097(+) (rexA) [Streptococcus anginosus strain VSI37]
ATGAGACAGATTCCATTTTTGAGTCAGGAAGAAATCTATGCTTTGCAGGATCAAGAAGCACAGTCTGACAAAGCTCAAAA
ACGTACACCAGATCAAATCGAAGCCATTTACTCCTCCGGTCAAAATATCCTTGTATCTGCTTCTGCAGGCTCAGGAAAAA
CCTTTGTTATGGTGCAGCGGATTATTGACCAAATTCTGCGGGGAGTTCGCATTGACCAGCTCTTCATTTCGACTTTTACC
GTTAAAGCAGCCAGTGAATTAAAAGAGCGCTTGGAGAAAGAGTTATCCAAGGTCTTGAAGGCAACAGATGATGAGGAGCT
CAAACAGCACTTGGCGCAGCAATTAGCCGATATTCCGAATGCCGACATTGGAACAATGGACTCTTTTACCCAAAAGGTCC
TCAATAAATATGGTTATCTCCTAGAATTGGCGCCAAATTTTCGCATTTTGCAAAATGCGAGTGAGCAGTTATTGCTACAA
AACGAAGTTTTTGAGCAAGTTTTTGAAGAATTCTATCAATCTGATCAGGCTATTTTATTTAAAAAATTAGTCAAAAACTT
TACCGGTCAAAGAAAAGATTTACTTGGTTTTCGAGAGCAGATTTATAAGATTTATGCTTTTTTGCAATCCACCAGTAGCC
CAATCGAATACTTAGAACAAGATTTCTTGAAAGCTTACGCTCATGCGGATTTCCAAGAAGAAAAAGCGCAACTTTTAGCA
AAAACAAAAGAAGCCCTTTTTGACCTAGAAGAATTTTTCCAGTATCATTTGGCGAATGAAGCCAAGGAATTTCCCAAAGC
AAAATACCTTGAAAATGTGCAGCGTGTGCTTGATTGTCTGGCAAGTTTACAAGGGCATTCCTCTGAGGAAGCCTATCTCA
CAACGCTCAATAACATTGTAGAAATATCGCGTGCCAGCAATGGAAAAGCCTTGACGAACAGCGGACGAAAAGAAGAATTA
AAAGAAATTATTAACGCCTATAACGAAAAACGCAAAGAAAAAATTCAAGTTTTACGAGATTTGGCAGATCAATTTTATCG
CTTTGAATTTCAAGTGACCTATCATGAGGAAGCCAAGGAAATCTTGCTTGTATTGCAGCAATTTATGAAATCGTTTGTGA
CAAGCTATCTACAACGGAAAAAAGAAGAAAATGCGTTTGAATTTGCAGATATCAGTCATTTTGCCATTCAGATTTTAGAA
GAATTTCCTGATGTGCGCCACTTTTATCGGACAAAATACCATGAAGTCATGGTGGATGAGTATCAAGATACCAACCACAC
GCAAGAGCGGATGCTAGAACTGTTATCAAATGGGGGTAATCGCTTTATGGTGGGGGATATTAAGCAGTCTATTTATCGTT
TTCGTCAGGCTGATCCGCAGATTTTTAATGAGAAATTTAAAACCTATCAAGACGATAGCCAGCAAGGGAAATTGATTGTT
TTGAAGGAAAATTTCCGCAGTCATGTGGAAGTCTTGGAAGCCACGAATGATGTTTTCAAACGTCTCATGGATGAGGAAGT
GGGAGAAATTGATTATAATGAAACGCATTATCTGGTAGCTGGAAATCCTGCTAAAAAAGCACCAAATCCACAATATCAGA
CGGAATTTCTCATTTATGACGGAACGCTTGAGACGGATAATGAGGAGAATGACAAGGATGTTTCTTCTGTTTCTGCAGGA
GAAGTAGCGCTGGTCATTAAGGAAATTATCCGTCTGCACAATGAGGAAAATGTCCCATTTGAAGATATGACATTGCTAAC
GGCTTCGCGGACGCGCAACGATGTGATTTTATCTGAGTTTGCCAAATACGGTATCCCAGTCGTTTCAGACGGTGGCGAGG
ATAATTATTTGCAATCTGTAGAAGTTATGGTGATGTTGGATACCCTGCGTACGATTAACAATCCGTTCAATGATTATGCT
TTAGTGGCGCTCTTAAAGTCACCAATGTTCACCTTTACTGAGGATGAATTGGCTCGTTTGGCCTTGCAAAAAAAGGTGAC
AGAAGCTACTTATGTTACTCATCAGGAAAATCTCTATGAGAAATTGAAAAATTCTCTGAGTGGGAACGGTCAACATCCCG
AACTCATCACACCTCCTCTTTTAAAGAAAATCCAGCAGTTTCAAGAAATATTGCTGGATTGGCGAGAGTTTGCAAAAATA
AATTCGCTCTATGATTTGCTTTGGAAAATTTATCAAGACCGCTTTTATTATGACTATGTAGGAGCCCTACCAAATGGAGC
AGGGCGTCAAGCGAATCTCTACGCTCTTACTTTGCGAGCAAATGACTACGAAAAGATGAGTTTTAAGGGCTTGTCGCGTT
TTATTGGGATGATTGATAAGATCTTAGAAACTCACAATGATTTGGCGAGTGTCGTCGTTGCGGCTCCGAAGCATGCAGTC
CGCTTGATGACAGTTCATAAGAGCAAAGGTTTGGAATTTAAATATGTCTTTTTGCTTAATATGGATAAAGTCTTCAATCG
TAAGGATAGTAGTTCTGCTTTGATTATCAGTCGTCAAAATGGCGTCGGCATCAAGTATGTTGCGGACGTAGTGGTAGACG
TTGCTGATGAGCTGGCGCCTAATCATGTTCGTTTGTCTATCGATACTCTTCCTTATGAGCAAAATGAGCGTGAGATTCAT
TTGGCAAGTATTTCTGAGCAGATGCGTCTGCTCTATGTTGCTATGACGCGGGCAGAAAGAAAGCTGTATCTGGTTGGCAA
AGGTCGTCAAGAAAGCTTGGAGAAAAAGACCTTCCCTGCTCCTGAAAATGGTCGTTTAGCAGCCTCCATTAGGCAAACTA
TGACAAGTTTTCAAGACTGGATTTGGGCTTTACAGACAGTCTTTGAGAAAGACGATTTAGCTTTTTCAACACAATTTGTG
ACGGATAGTGACTTAACAAGTGAGAAAATAGGTCAGTTAAAGCTGAAGGAACGGATTGTCGAGGAGAACTTAGCGCACAA
TCGCCAGTCTGAGGATATTCGCAGGGCTTTGGATATTTTGGAAAATGTGGACAGGCTAAATACTCAGTATCGAGCAGCCA
TCCATTTGCCAAGTGTTCGGACACCGAGCCAAATCAAGAAATTTTATGAACCGGTCATGGATACAGACGGTGTTGAGATT
ATGGAGAAAAAAACTCCAGATTTTATTGGAAAAACTTCTTTTGAACTACCTGACTTTGCTAAAAAAGCCCCTGTTATAGG
AGCGCAAATCGGTAGTGCTGTCCATGAACTGATGCAGCGTATTCCTTTAAATCAACTGCCTACAATAGCTATTTTAAAGA
AAATATTGGCTCAGGTTCAGGCAGAAGAAACTGTCAAAAAGAAGATTGATTTGCAAAAGATAGCTAGTTTCTTTGAGACA
GAGCTTGGTCAACTACTCTTAAAGCAGGCAGATAAAGTTTATCGTGAAGCTCCATTTGCTATGTTAAAGCAAGATCAAGC
GAGCGGACAGGATTTTGTAGTCCGTGGAATTTTGGATGGTTATCTCCTACTGGCTGATCGTATCGTTCTCTTTGATTATA
AGACAGATCAATATACAAATCCAAGTGAATTAGTGGAGCGCTACCAGGCACAATTAGCACTTTACGCTGAAGCTCTTCGT
CGTTCGTATGGTATTGAAAAAATAGAAAAATATCTAGTGTTGTTGGGCGGAGTTCAACTTCAAGTAGTAAAAGTAGACTA
G


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

60.44

100

0.604