Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   NW975_RS07460 Genome accession   NZ_CP102971
Coordinates   1564876..1565322 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 08-G-E     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1559876..1570322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW975_RS07430 (NW975_07430) gcvPA 1560802..1562148 (-) 1347 WP_258411690.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  NW975_RS07435 (NW975_07435) gcvT 1562168..1563259 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  NW975_RS07440 (NW975_07440) - 1563418..1563942 (-) 525 WP_001015121.1 shikimate kinase -
  NW975_RS07445 (NW975_07445) - 1563932..1564078 (-) 147 WP_001789879.1 hypothetical protein -
  NW975_RS07450 (NW975_07450) comGF 1564175..1564672 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  NW975_RS07455 (NW975_07455) comGE 1564590..1564889 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  NW975_RS07460 (NW975_07460) comGD 1564876..1565322 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  NW975_RS07465 (NW975_07465) comGC 1565300..1565611 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  NW975_RS07470 (NW975_07470) comGB 1565625..1566695 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  NW975_RS07475 (NW975_07475) comGA 1566667..1567641 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  NW975_RS07480 (NW975_07480) - 1567693..1568316 (-) 624 WP_209281829.1 MBL fold metallo-hydrolase -
  NW975_RS07485 (NW975_07485) - 1568313..1568642 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  NW975_RS07490 (NW975_07490) - 1568642..1569628 (-) 987 WP_000161315.1 ROK family glucokinase -
  NW975_RS07495 (NW975_07495) - 1569625..1569828 (-) 204 WP_258410696.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=720871 NW975_RS07460 WP_001788899.1 1564876..1565322(-) (comGD) [Staphylococcus aureus strain 08-G-E]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=720871 NW975_RS07460 WP_001788899.1 1564876..1565322(-) (comGD) [Staphylococcus aureus strain 08-G-E]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1