Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   PUW49_RS00220 Genome accession   NZ_CP118054
Coordinates   28653..29426 (+) Length   257 a.a.
NCBI ID   WP_024052909.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23653..34426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW49_RS00200 (PUW49_00200) mreD 24432..24932 (+) 501 WP_024052913.1 rod shape-determining protein MreD -
  PUW49_RS00205 (PUW49_00205) - 25042..26232 (+) 1191 WP_024052912.1 CHAP domain-containing protein -
  PUW49_RS00210 (PUW49_00210) - 26365..27333 (+) 969 WP_024052911.1 ribose-phosphate diphosphokinase -
  PUW49_RS00215 (PUW49_00215) - 27488..28675 (+) 1188 WP_024052910.1 pyridoxal phosphate-dependent aminotransferase -
  PUW49_RS00220 (PUW49_00220) recO 28653..29426 (+) 774 WP_024052909.1 DNA repair protein RecO Machinery gene
  PUW49_RS00225 (PUW49_00225) plsX 29423..30421 (+) 999 WP_070241458.1 phosphate acyltransferase PlsX -
  PUW49_RS00230 (PUW49_00230) - 30418..30663 (+) 246 WP_024052907.1 acyl carrier protein -
  PUW49_RS00235 (PUW49_00235) purC 30822..31529 (+) 708 WP_024052906.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 30075.49 Da        Isoelectric Point: 6.0889

>NTDB_id=720838 PUW49_RS00220 WP_024052909.1 28653..29426(+) (recO) [Streptococcus anginosus strain VSI37]
MLKSITSKGLVLYNRNFRENDKLVKIFTEQAGKRMFFVKHARNSKLNPVVQPLVVADFLMKINDDGLSYIDDYQEVTTFQ
HINHDLFTMAYATYVVALADASIQDNKIDSALFAFLQKTLELMEQGLDYEVLTNIFEIQILSRFGIYLNFHECCFCHRVG
LPFDFSFTYNGVLCSEHYNKDERRSHLDPNIPYLLDQFQAIQYSELETISLNPELKRQLRKVIDQIYEEYVGIHLKPKKF
IDSLGDWGEILKNKESK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=720838 PUW49_RS00220 WP_024052909.1 28653..29426(+) (recO) [Streptococcus anginosus strain VSI37]
ATGCTGAAATCCATCACAAGTAAAGGTTTGGTTCTCTATAATCGTAATTTCCGAGAAAATGATAAACTGGTCAAAATTTT
CACAGAGCAAGCTGGTAAGCGAATGTTTTTCGTGAAACATGCTAGAAATTCTAAGTTGAATCCGGTTGTCCAACCATTGG
TAGTGGCCGATTTTTTGATGAAAATAAATGATGACGGTTTGAGTTATATCGATGATTATCAAGAGGTTACGACTTTCCAG
CATATCAATCATGATTTGTTTACAATGGCTTATGCAACTTATGTGGTAGCTCTGGCAGACGCCAGTATTCAGGATAATAA
AATAGATTCGGCTCTCTTTGCTTTTTTGCAAAAAACGTTGGAATTGATGGAGCAGGGCTTGGATTATGAGGTGCTGACCA
ATATTTTTGAAATTCAAATTTTGTCACGTTTTGGAATTTATTTGAATTTCCATGAATGCTGCTTTTGCCACCGAGTAGGA
TTGCCGTTTGATTTTTCTTTTACTTATAACGGCGTTTTATGCTCGGAACATTACAACAAAGACGAGAGACGGAGTCATTT
GGATCCCAACATTCCTTACTTATTAGACCAATTTCAAGCGATTCAATATAGTGAATTGGAGACCATTTCTTTGAATCCTG
AGTTAAAACGACAATTACGAAAAGTGATTGATCAAATTTATGAAGAATATGTTGGGATTCATCTAAAGCCAAAAAAATTT
ATTGATTCTCTGGGAGACTGGGGAGAAATTTTAAAGAATAAGGAGTCGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-236)

Recombination protein O N terminal (RecO_N)

(4-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

74.902

99.222

0.743