Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   PUW71_RS08165 Genome accession   NZ_CP118053
Coordinates   1588702..1590717 (-) Length   671 a.a.
NCBI ID   WP_070241957.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1583702..1595717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW71_RS08145 (PUW71_08145) - 1584097..1585311 (-) 1215 WP_024052676.1 pyridoxal phosphate-dependent aminotransferase -
  PUW71_RS08150 (PUW71_08150) - 1585463..1585915 (+) 453 WP_020999785.1 universal stress protein -
  PUW71_RS08155 (PUW71_08155) - 1585961..1587349 (-) 1389 WP_264341300.1 Cof-type HAD-IIB family hydrolase -
  PUW71_RS08160 (PUW71_08160) - 1587414..1588376 (+) 963 WP_024052678.1 asparaginase -
  PUW71_RS08165 (PUW71_08165) recG/mmsA 1588702..1590717 (-) 2016 WP_070241957.1 ATP-dependent DNA helicase RecG Machinery gene
  PUW71_RS08170 (PUW71_08170) alr 1590821..1591927 (-) 1107 WP_150888755.1 alanine racemase -
  PUW71_RS08175 (PUW71_08175) acpS 1591914..1592279 (-) 366 WP_003026132.1 holo-ACP synthase -
  PUW71_RS08180 (PUW71_08180) - 1592387..1593427 (-) 1041 WP_024052682.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75755.52 Da        Isoelectric Point: 5.8689

>NTDB_id=720809 PUW71_RS08165 WP_070241957.1 1588702..1590717(-) (recG/mmsA) [Streptococcus anginosus strain VSI40]
MNLHQPLTVLPGVGPKSAEKFTKLGIESLQDLLLYFPFRYEDFKSKNVLELEDGEKAVISGVVTTPANVQYYGYKRNRLR
FTIKQDEMVLAVNFFNQPYLADKVEVGSTIAIFGKWDKAKASLTGMKILAQVEDDLQPVYRVAQGISQASLVKVIKTAFD
QGLELLLEENLPQVLLERYQLLGRNQAVRAMHFPRDWAEYKQALRRIKFEELFYFQMQLQVLKCETKDVSQGLIIPWRAD
LLEKKKATLPFELTAAQERSLNEILQDMKSPAHMNRLLQGDVGSGKTVVAGLAMYTTYTAGLQSALMVPTEILAEQHFDS
LSQLFPELRIILLTGGMKPAERRQALEAIEDGQVDMIVGTHALIQEGVTYHRLGLVIIDEQHRFGVGQRRILREKGNNPD
VLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIITRWVKHEQLEVVLDWLRKELQRGAQVYVISPLIEESEALDLKN
AIVLEEELKAYFGDKAQVALLHGKMKSEEKDTIMQDFKEGKTDILVSTTVIEVGVNVPNATVMLIMDADRFGLSQLHQLR
GRVGRGDKQSYAVLVANPKTESGKKRMKIMTETTDGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIVEDYPILEEARK
VASQIVSTPDWRTNADWHIVALHLDKQDYLD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=720809 PUW71_RS08165 WP_070241957.1 1588702..1590717(-) (recG/mmsA) [Streptococcus anginosus strain VSI40]
ATGAATTTACACCAACCTTTAACGGTTCTTCCGGGTGTGGGGCCGAAATCTGCTGAAAAATTTACTAAGCTGGGAATTGA
AAGCCTGCAAGATTTGCTGCTCTATTTTCCATTTCGCTATGAAGATTTTAAAAGTAAGAATGTGTTAGAACTGGAAGATG
GTGAAAAGGCAGTTATTTCAGGGGTGGTGACTACACCAGCAAATGTCCAGTACTATGGCTACAAGCGCAATCGCCTGCGT
TTTACCATAAAGCAGGATGAAATGGTACTTGCAGTCAACTTCTTTAACCAACCTTATCTAGCAGACAAGGTGGAGGTTGG
CTCAACCATTGCTATTTTCGGAAAATGGGATAAGGCAAAAGCTAGTTTGACCGGGATGAAAATTCTAGCACAAGTAGAAG
ATGATTTGCAGCCAGTTTATCGAGTAGCTCAAGGGATTAGTCAAGCCAGTTTGGTCAAGGTCATTAAGACAGCCTTTGAC
CAAGGGTTGGAATTGCTCTTGGAGGAAAATTTGCCCCAAGTGTTGTTAGAACGCTATCAGTTGCTAGGACGGAATCAGGC
TGTGCGAGCAATGCATTTTCCAAGGGATTGGGCAGAGTACAAGCAGGCTTTGCGTCGGATCAAGTTTGAAGAGCTTTTTT
ACTTTCAAATGCAATTGCAAGTTCTCAAATGTGAAACAAAAGATGTTAGTCAGGGCTTAATTATTCCTTGGCGGGCAGAT
TTGCTAGAAAAGAAAAAAGCTACTCTACCTTTTGAGTTAACGGCTGCTCAAGAGCGCAGTCTAAACGAGATTTTACAGGA
TATGAAATCGCCAGCTCACATGAACAGGCTCTTGCAGGGAGATGTCGGAAGCGGAAAGACGGTGGTTGCAGGTTTAGCTA
TGTATACTACTTATACAGCTGGTTTGCAGTCTGCTCTCATGGTGCCAACGGAAATCTTGGCAGAGCAGCACTTTGATAGC
TTGAGCCAACTTTTTCCTGAACTGCGGATAATTCTGTTGACAGGGGGAATGAAGCCAGCAGAACGCAGACAGGCACTAGA
AGCTATTGAGGATGGTCAGGTGGATATGATCGTCGGCACTCATGCTTTGATTCAAGAAGGCGTGACATATCATCGGCTCG
GTCTGGTGATTATTGATGAACAGCACCGTTTTGGAGTGGGACAGAGACGAATTTTGCGGGAAAAAGGAAATAATCCTGAT
GTGCTCATGATGACTGCAACGCCCATTCCTAGGACGCTTGCTATTACTGCTTTTGGTGATATGGATGTGTCCATTATTGA
CCAAATGCCAGCTGGGCGTAAGCCGATTATCACCCGTTGGGTCAAGCATGAGCAGCTGGAAGTAGTTCTGGATTGGTTGA
GGAAAGAGCTGCAACGAGGTGCTCAGGTCTATGTCATCTCTCCTTTGATTGAGGAGTCGGAAGCTCTGGATCTGAAAAAT
GCGATTGTTTTGGAAGAGGAATTAAAGGCTTATTTCGGTGACAAAGCACAAGTAGCTCTGCTACATGGTAAAATGAAGAG
CGAAGAAAAAGATACCATTATGCAGGATTTTAAGGAAGGGAAAACGGACATTCTGGTTTCCACGACTGTTATTGAAGTCG
GTGTCAATGTGCCCAATGCTACGGTCATGCTAATCATGGATGCGGACCGATTTGGGCTCAGCCAGCTTCATCAGTTACGT
GGTCGAGTAGGACGTGGAGATAAACAGTCTTATGCGGTTCTTGTAGCCAATCCTAAGACAGAATCTGGCAAGAAACGCAT
GAAAATCATGACGGAAACGACTGACGGTTTTGTCTTAGCTGAGGAAGATTTGAAAATGCGTGGTTCTGGTGAAATCTTCG
GCACTCGTCAGTCCGGTTTGCCGGAATTTCAGGTGGCAGATATTGTAGAGGATTATCCAATTTTAGAGGAGGCCAGAAAA
GTCGCCAGTCAAATTGTGTCCACTCCTGATTGGCGAACGAATGCAGATTGGCATATTGTAGCGCTTCATTTGGACAAGCA
GGACTACTTGGATTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(447-566)

DEAD/DEAH box helicase (DEAD)

(254-411)

RecG wedge domain (RecG_wedge)

(12-158)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-660)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

78.987

100

0.79
  recG/mmsA Streptococcus pneumoniae R36A

78.987

100

0.79
  recG Bacillus subtilis subsp. subtilis str. 168

47.64

100

0.481
  recG Neisseria meningitidis strain C311

38.863

97.019

0.377