Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   PUW71_RS05560 Genome accession   NZ_CP118053
Coordinates   1101558..1103792 (-) Length   744 a.a.
NCBI ID   WP_264341271.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1096558..1108792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW71_RS05545 (PUW71_05545) - 1099542..1099907 (+) 366 WP_003024106.1 GntR family transcriptional regulator -
  PUW71_RS05550 (PUW71_05550) - 1099911..1100606 (+) 696 WP_024052378.1 ABC transporter ATP-binding protein -
  PUW71_RS05555 (PUW71_05555) - 1100624..1101421 (+) 798 WP_024052377.1 ABC transporter -
  PUW71_RS05560 (PUW71_05560) recJ 1101558..1103792 (-) 2235 WP_264341271.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  PUW71_RS05565 (PUW71_05565) - 1103888..1104304 (-) 417 WP_024052375.1 GNAT family N-acetyltransferase -
  PUW71_RS05570 (PUW71_05570) - 1104282..1105019 (-) 738 Protein_1058 methyltransferase domain-containing protein -
  PUW71_RS05575 (PUW71_05575) - 1105029..1105784 (-) 756 WP_024052373.1 SDR family oxidoreductase -
  PUW71_RS05580 (PUW71_05580) - 1105794..1106402 (-) 609 WP_024052372.1 histidine phosphatase family protein -
  PUW71_RS05585 (PUW71_05585) rnz 1106449..1107379 (-) 931 Protein_1061 ribonuclease Z -
  PUW71_RS05590 (PUW71_05590) - 1107390..1108019 (-) 630 WP_024052370.1 hypothetical protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 83724.63 Da        Isoelectric Point: 4.4693

>NTDB_id=720798 PUW71_RS05560 WP_264341271.1 1101558..1103792(-) (recJ) [Streptococcus anginosus strain VSI40]
MITSKYDWQIATNFSDESFIKKAKKLGLEASVANLVYQRGIQTEEALRDFLEPSLDQLHDPYELHDMDKAVTRIRQAIEN
YEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFTDGYGPNASVYKYFIENQGISLIVTVDNGVAGHEAIELAQ
SMGVDVIVTDHHSMPEVLPDAYAIIHPEHPEADYPFKHLAGCGVAFKLATALLEEVQVELLDIVAIGTIADMVSLTDENR
ILVKYGLSVLKNTQRIGLQELFKIADIQENEVDEETVGFQIAPRLNALGRLDDPNPAIELLTGFDEEEARDIALMINHKN
EERKEIVQKIYDEAKTMVDLNKPVQVLAGEGWNPGVLGIVAGRFLEELHQPVIVLNIENGLAKGSARSIEAVDIFEALDP
HRDLFVAFGGHAGAAGMTLEASKLEALSQVLVAYIEDNQVDLSTKNELFLDEELSLPDLTLETLKNFEKLAPFGMDNKKP
VFYLKDFKIENARTMGAGNTHLKLKISQADAVFEVVAFGLGNLATEFSQTKNLELAVTLSVNKWNGQTSLQLMLVDARVN
GIQLFNIRGKNAPLPENVPVLRFSEEMPNLEKSRAVVVYDLPERLNQLKVIIQQGHFEAIYFKNEIAQPYYLTGFGTRDQ
FAKFYKTIYQFPEFDIRYKLKELAAYLKIDPILLIKMIQIFEELDFVTIQDGVMQVNKKAEKKAIENSHIYQELKKTVKE
QELMALGTVQEIYDYLIEKDEFSN

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=720798 PUW71_RS05560 WP_264341271.1 1101558..1103792(-) (recJ) [Streptococcus anginosus strain VSI40]
ATGATTACATCAAAATATGATTGGCAGATTGCCACAAATTTTTCAGATGAGAGCTTTATTAAAAAAGCTAAAAAACTTGG
CTTGGAGGCTTCGGTAGCTAATCTGGTCTACCAGAGAGGAATCCAGACAGAAGAAGCACTGCGAGATTTTCTAGAGCCTA
GTTTGGACCAGCTGCATGATCCTTATGAACTGCATGATATGGATAAGGCAGTGACGCGCATTCGTCAAGCGATTGAAAAT
TATGAGCAGATCTTGATTTATGGAGATTATGATGCGGATGGCATGACTTCGGCTTCTATTGTTAAAGAAGCACTAGAACA
ACTTGGAGCAGAGTGTCAGGTCTATTTGCCCAATCGATTTACAGACGGTTATGGTCCTAACGCAAGTGTTTACAAGTATT
TTATTGAAAATCAGGGAATTTCACTCATCGTTACAGTGGATAATGGAGTTGCAGGACATGAAGCAATCGAACTAGCTCAG
TCTATGGGAGTGGATGTCATTGTGACGGATCACCATTCTATGCCAGAGGTACTTCCTGATGCTTATGCAATTATTCACCC
AGAACATCCGGAAGCTGATTATCCTTTTAAGCATTTAGCTGGTTGCGGTGTAGCTTTTAAGTTAGCGACTGCTCTTTTAG
AGGAAGTACAAGTAGAGTTGCTAGATATAGTCGCTATTGGAACTATTGCAGATATGGTCAGCCTAACAGATGAAAATCGC
ATTCTGGTCAAATATGGGCTAAGTGTCCTCAAAAACACTCAACGAATCGGCTTGCAGGAGCTTTTTAAGATTGCAGATAT
TCAGGAAAATGAAGTGGATGAAGAAACAGTTGGTTTTCAGATAGCTCCCAGACTCAATGCTCTAGGTCGACTTGATGATC
CAAATCCTGCTATTGAACTTCTGACGGGCTTTGATGAGGAAGAAGCGCGTGACATTGCCCTTATGATTAACCATAAAAAT
GAAGAGCGCAAAGAAATTGTTCAGAAGATCTATGATGAAGCCAAGACCATGGTTGATCTCAATAAACCTGTTCAGGTTCT
AGCCGGTGAAGGTTGGAATCCAGGTGTTTTGGGAATTGTGGCAGGGCGGTTTTTGGAAGAATTACACCAGCCGGTCATCG
TCTTGAATATTGAGAATGGATTAGCAAAAGGCAGCGCCCGCAGCATTGAAGCAGTTGATATTTTTGAAGCGTTAGACCCT
CATCGAGATTTATTTGTGGCTTTTGGTGGGCATGCAGGGGCAGCTGGGATGACTCTAGAGGCCAGCAAGTTAGAAGCACT
CAGCCAGGTTTTGGTAGCATATATTGAAGATAATCAAGTGGATTTGTCCACTAAGAATGAGCTCTTTTTGGATGAGGAAT
TATCCTTGCCAGATTTGACACTAGAGACCCTCAAAAACTTTGAAAAGTTAGCTCCTTTTGGCATGGACAATAAAAAGCCT
GTTTTTTATTTGAAAGATTTTAAAATTGAAAATGCCCGCACCATGGGAGCAGGGAATACTCACCTTAAGCTGAAAATTTC
TCAGGCTGACGCAGTTTTTGAGGTCGTAGCTTTTGGTCTAGGTAATCTTGCGACAGAATTTTCCCAAACTAAAAACTTAG
AGCTGGCGGTTACGCTGTCGGTCAATAAATGGAATGGTCAAACTAGTCTCCAGCTTATGCTGGTGGATGCTAGGGTCAAT
GGGATTCAGCTCTTTAATATCCGAGGTAAAAATGCTCCTTTACCTGAAAATGTGCCCGTCCTGCGTTTTTCAGAAGAAAT
GCCTAATTTGGAAAAGAGCAGAGCAGTTGTGGTGTATGACTTGCCTGAACGCCTAAATCAGCTCAAAGTAATCATTCAGC
AAGGACATTTTGAAGCAATTTACTTTAAAAATGAGATTGCTCAGCCCTATTATCTGACAGGTTTCGGAACGAGAGACCAG
TTTGCCAAATTCTATAAAACAATTTATCAATTTCCAGAGTTTGACATTCGTTATAAGCTCAAAGAACTGGCTGCTTATCT
CAAGATTGACCCAATTCTACTCATAAAGATGATTCAGATATTTGAAGAGCTGGACTTTGTGACAATTCAAGATGGAGTGA
TGCAAGTAAACAAAAAAGCAGAAAAAAAAGCTATTGAAAACAGCCATATTTATCAAGAACTGAAGAAAACAGTCAAGGAG
CAGGAGCTTATGGCTCTAGGAACTGTGCAGGAAATTTATGATTATCTGATAGAAAAAGATGAATTTTCAAACTAA

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-434)

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(590-734)

RecJ OB domain (RecJ_OB)

(451-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

76.622

99.462

0.762
  recJ Bacillus subtilis subsp. subtilis str. 168

37.887

100

0.395