Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   PUW71_RS03205 Genome accession   NZ_CP118053
Coordinates   627108..630380 (+) Length   1090 a.a.
NCBI ID   WP_070241607.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 622108..635380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW71_RS03175 (PUW71_03175) - 622406..623272 (+) 867 WP_070241604.1 ABC transporter permease -
  PUW71_RS03180 (PUW71_03180) - 623269..624027 (+) 759 WP_101750296.1 ABC transporter ATP-binding protein -
  PUW71_RS03185 (PUW71_03185) - 624043..624384 (-) 342 WP_003028044.1 hypothetical protein -
  PUW71_RS03190 (PUW71_03190) - 624472..624684 (+) 213 WP_003025304.1 YdbC family protein -
  PUW71_RS03195 (PUW71_03195) - 624885..625778 (+) 894 WP_024051910.1 ABC transporter ATP-binding protein -
  PUW71_RS03200 (PUW71_03200) - 625775..626989 (+) 1215 WP_195916310.1 ABC transporter permease -
  PUW71_RS03205 (PUW71_03205) rexB 627108..630380 (+) 3273 WP_070241607.1 ATP-dependent nuclease subunit B Machinery gene
  PUW71_RS03210 (PUW71_03210) rexA 630377..634057 (+) 3681 WP_150889805.1 helicase-exonuclease AddAB subunit AddA Machinery gene

Sequence

Protein


Download         Length: 1090 a.a.        Molecular weight: 125428.24 Da        Isoelectric Point: 5.1914

>NTDB_id=720771 PUW71_RS03205 WP_070241607.1 627108..630380(+) (rexB) [Streptococcus anginosus strain VSI40]
MKLLYTDIRNPLTKILVKEAERLAQAGKRVFYIAPNSLSFEKERAVLSLLENHASFAITVTRFAQMARYFVLNDVQQGRP
LDDIGLGMLFYKVLSEMEEHDLQVYGGIRTDVQFIQQLVELFHELQAAQMTFADLDYLDEDEKKADLIKILQLVTHQLNQ
SEFISESNIMVFANHITAGDVDKELQGLALVIDGFTRFSAEEAYLIELLHSKGVEIIIGVYASEKAYRATFREGNLYQAS
VDFLRHLANEYEVKPEYRPATQPDDAFGNISKLLESRYDFSDVELELTEQDRSHVQIWSTVNQKEELEYVAKSIRQRVHD
GARYKDIRLLLGDVEAYRLQLKTIFDQYQIPFYLGRSESMAHHPLVQFIEALVRLKRYNFRTEDLLNLVKTGLYGHLKQE
ELDLFEQYIRFADVKGISKFSKDFTHNQHQKFDLIHINQLRKKIVTPLLEFLKSRSQTATGLLQKFHQFLTTIAFSQNFA
GLVDSTNPQDQERQEEVWKAFCHVLEQFASVFSASKVKLDDFLTLVQSGMLLSNYRTIPATVDVVTVQSYDLIEPLSSPF
VYAVGLTQDYFPKNSQNKSLLSDEDRLRLNEATDAHSELLIAAQENLQKNRFVALSLLNAATERLVLSTPQIVNEIENNI
SPYLLELHEQPIGLSIEVKRLQETSDDIGTYRALLARVIELNQGDIDRERSLTEKEQTFWSVAVRVLRKKLESEGISIPN
VTSSLETETLSTQTLQALYPPHQAFLLSTSALTEFYRNQYAYFLKYVLALQEEMTIHPDARSHGNFLHRVFEKVMQEQSS
EPFDNRLEKAIQETSQEAEFKTLYTENAEALFAHEVLLDTARATGRVLERNDLVETIQEEAVFGQEETNVLILSDGRNLQ
IRGKVDRIDRLRIDGSLGVVDYKSSDTNFDFQKFFNGLNSQLPTYLAALKQESWMNEEEHAFGAMYLQMTNPLVPLAKTK
SQGDAVKEAMKNLEYKGLFLSEQARQLNALYDKKKVNLLSQEELETLLAYNALLYRRAAEQILAGHFYINPYTENGRSIA
PFVEQYKSITGFEANFHLSSTRHLVKLDSHPTGEKKRQAWIEKMKEELEK

Nucleotide


Download         Length: 3273 bp        

>NTDB_id=720771 PUW71_RS03205 WP_070241607.1 627108..630380(+) (rexB) [Streptococcus anginosus strain VSI40]
ATGAAATTACTTTATACTGATATTCGCAATCCCTTAACGAAGATTTTGGTGAAAGAAGCAGAGCGCTTGGCACAAGCAGG
CAAGCGCGTGTTTTATATTGCCCCCAACTCTCTTTCATTTGAAAAAGAGAGGGCTGTTTTGAGTCTTTTAGAAAACCACG
CTTCGTTTGCTATTACAGTGACACGTTTTGCGCAGATGGCGCGTTATTTTGTCCTCAATGATGTGCAGCAAGGCAGACCA
TTAGACGATATTGGTTTGGGAATGCTCTTTTATAAGGTATTATCTGAAATGGAAGAGCATGATTTGCAGGTGTACGGAGG
CATTCGGACGGATGTGCAGTTTATTCAGCAATTGGTTGAGCTTTTTCATGAATTGCAAGCTGCTCAAATGACCTTTGCGG
ATTTAGACTATCTAGATGAGGATGAGAAAAAAGCAGATTTGATCAAGATTTTACAGCTAGTGACGCATCAGCTAAATCAG
AGTGAATTTATTTCTGAGTCAAATATTATGGTCTTTGCTAATCATATTACAGCAGGTGATGTAGATAAAGAATTGCAAGG
ATTGGCTTTGGTCATTGACGGTTTTACACGTTTTTCAGCTGAAGAAGCTTATTTGATCGAGCTTTTGCATAGCAAGGGTG
TGGAAATCATTATTGGTGTTTATGCCAGTGAGAAGGCATACCGTGCAACTTTTCGAGAGGGCAATCTCTATCAGGCTAGC
GTGGATTTCTTGCGCCATTTGGCAAATGAGTATGAAGTGAAACCTGAATATAGACCTGCAACGCAGCCAGATGATGCTTT
TGGGAACATTTCAAAACTGCTAGAAAGCCGTTATGATTTCTCAGATGTTGAGTTGGAATTGACGGAGCAAGACCGCTCGC
ATGTACAGATTTGGTCGACTGTCAATCAAAAAGAAGAACTGGAATATGTGGCGAAAAGCATTCGCCAGCGAGTTCATGAT
GGTGCTCGCTACAAAGATATTCGCTTACTTTTGGGAGATGTGGAAGCCTATCGTTTGCAGTTAAAGACGATTTTTGATCA
GTATCAGATTCCTTTTTATTTGGGGCGAAGCGAGTCCATGGCACATCACCCTTTGGTGCAGTTTATTGAAGCGTTAGTGC
GTTTAAAACGCTATAATTTTCGGACAGAAGATTTGCTCAATCTTGTAAAAACAGGTCTTTATGGTCATTTAAAGCAAGAA
GAACTAGACTTATTTGAGCAATATATTCGCTTTGCAGATGTAAAAGGGATTAGTAAATTTTCTAAAGATTTTACTCATAA
TCAGCATCAAAAATTTGACCTGATTCACATCAATCAATTAAGAAAAAAAATAGTCACTCCGCTTTTGGAGTTTTTAAAAT
CTCGCAGTCAAACAGCGACAGGTTTGCTTCAAAAATTTCATCAATTTTTAACAACAATTGCTTTTTCTCAGAATTTTGCT
GGTTTGGTAGATTCTACGAATCCGCAAGATCAAGAACGGCAAGAAGAAGTTTGGAAAGCTTTTTGTCATGTTTTGGAACA
ATTTGCTAGTGTCTTTTCAGCCAGCAAGGTCAAGCTAGATGATTTTCTGACTCTAGTGCAGTCAGGAATGCTGTTATCCA
ACTATCGAACTATTCCAGCAACGGTGGACGTTGTGACCGTTCAATCTTATGATTTGATTGAGCCCTTGTCAAGTCCTTTT
GTCTATGCTGTTGGTTTGACCCAAGACTATTTTCCAAAAAATTCCCAAAATAAGAGCCTTTTGTCAGACGAAGACCGACT
ACGATTAAATGAAGCGACTGATGCGCATTCGGAATTGCTGATTGCTGCTCAGGAAAATCTCCAGAAAAATCGTTTTGTTG
CCTTGTCGCTTTTGAATGCTGCAACAGAGAGGCTTGTCCTCTCCACCCCTCAGATTGTCAATGAAATAGAGAACAACATT
TCTCCATATTTGTTAGAATTGCATGAACAACCAATTGGGCTATCGATTGAAGTGAAGCGTTTGCAGGAAACGAGTGATGA
TATTGGAACTTATCGAGCTCTGCTGGCAAGGGTTATTGAGTTGAATCAAGGGGATATTGATCGGGAGCGTTCTTTGACGG
AGAAAGAGCAGACTTTTTGGTCAGTAGCTGTGCGGGTTCTGCGCAAAAAATTGGAAAGCGAAGGTATTTCGATTCCTAAT
GTAACGTCAAGCCTTGAAACAGAAACCTTGTCAACGCAGACATTGCAAGCTCTTTATCCGCCTCATCAGGCATTTCTACT
GTCGACTTCAGCTTTGACAGAATTCTACCGCAATCAATATGCTTATTTTTTGAAGTATGTCTTGGCTTTGCAGGAAGAAA
TGACGATTCACCCAGATGCGCGCAGCCATGGAAATTTTCTGCATCGTGTGTTTGAAAAAGTCATGCAAGAGCAGTCTAGT
GAGCCATTTGATAATCGCCTAGAAAAAGCCATTCAAGAAACCAGTCAGGAGGCAGAATTTAAAACTCTTTATACGGAAAA
TGCAGAAGCCTTGTTTGCTCACGAAGTCTTGCTGGACACAGCGCGTGCGACAGGGCGTGTTCTAGAAAGAAATGATTTAG
TAGAAACCATTCAAGAAGAAGCTGTTTTCGGTCAAGAAGAAACAAATGTTCTAATCTTGTCAGACGGACGCAACCTTCAA
ATTCGAGGGAAAGTTGACCGGATTGACCGTTTGAGGATAGATGGCAGTCTAGGCGTTGTTGACTATAAATCAAGCGATAC
GAATTTTGATTTTCAGAAATTTTTCAATGGCTTAAATTCTCAATTACCTACCTATCTAGCAGCTTTGAAACAAGAGTCGT
GGATGAATGAAGAAGAGCATGCTTTTGGCGCCATGTATTTGCAGATGACCAATCCACTTGTGCCTTTAGCCAAGACGAAA
TCGCAAGGCGACGCTGTCAAAGAAGCAATGAAGAACCTAGAATATAAAGGTCTGTTCTTGTCTGAGCAGGCTCGTCAGCT
GAATGCTTTGTACGATAAAAAGAAAGTGAATCTGTTGAGTCAAGAGGAGTTGGAGACATTGTTGGCTTATAATGCACTCT
TGTATCGCCGTGCTGCTGAGCAGATCTTGGCAGGGCATTTTTACATCAATCCTTATACGGAAAATGGCAGAAGTATTGCA
CCTTTTGTGGAGCAGTACAAGTCCATTACGGGATTTGAAGCTAACTTTCACCTCTCTAGCACCCGCCATTTGGTTAAGTT
AGATAGCCACCCGACAGGTGAAAAGAAGCGTCAAGCATGGATAGAAAAGATGAAGGAGGAGTTAGAAAAATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1033)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

55.818

100

0.563