Detailed information NTG0072074

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: SHINM1_RS00185
• Genome accession: NZ_AP019011
• Coordinates: 34450..35415 (-)
• Length: 321 a.a.
• NCBI ID: WP_418744638.1
• Uniprot ID: -
• Organism: Fluviibacter phosphoraccumulans strain SHINM1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 29450..40415

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SHINM1_RS00160 (SHINM1_000290)	ruvA	30268..30864 (-)	597	WP_162050698.1	Holliday junction branch migration protein RuvA	-
SHINM1_RS00165 (SHINM1_000300)	ruvC	30861..31424 (-)	564	WP_242451614.1	crossover junction endodeoxyribonuclease RuvC	-
SHINM1_RS00170 (SHINM1_000310)	-	31473..32201 (-)	729	WP_162050696.1	YebC/PmpR family DNA-binding transcriptional regulator	-
SHINM1_RS00175 (SHINM1_000320)	rpoH	32341..33219 (-)	879	WP_418744637.1	RNA polymerase sigma factor RpoH	-
SHINM1_RS00180 (SHINM1_000330)	-	33323..34438 (-)	1116	WP_162050694.1	calcium:proton antiporter	-
SHINM1_RS00185 (SHINM1_000340)	pilA	34450..35415 (-)	966	WP_418744638.1	signal recognition particle-docking protein FtsY	Machinery gene
SHINM1_RS00190 (SHINM1_000350)	-	35446..36852 (+)	1407	WP_162050692.1	M16 family metallopeptidase	-
SHINM1_RS00195 (SHINM1_000360)	-	36852..38162 (+)	1311	WP_244660476.1	M16 family metallopeptidase	-
SHINM1_RS00200 (SHINM1_000370)	rsmD	38165..38752 (+)	588	WP_162050690.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
SHINM1_RS00205 (SHINM1_000380)	coaD	38757..39254 (+)	498	WP_162051006.1	pantetheine-phosphate adenylyltransferase	-
SHINM1_RS00210 (SHINM1_000390)	-	39338..39586 (+)	249	WP_162050689.1	YfhL family 4Fe-4S dicluster ferredoxin	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 34092.19 Da
• Isoelectric Point: 6.6123

>NTDB_id=72074 SHINM1_RS00185 WP_418744638.1 34450..35415(-) (pilA) [Fluviibacter phosphoraccumulans strain SHINM1]
MTKDTPATMSDATDNQPRRSWRERLFAGLTKTRQQIGGSVRSLFARGQVDDELLEELEALLLSADVGVEATIILIEDLRQ
RARKHKLQTPEAIQSAMVDCLADLLQPLEAPLQISPPADSPFVIMVAGINGAGKTTTLGKLAHHFQAAGHSVLLAAGDTF
RAAAREQLQAWGARNNVTVIAQEGGDPSAVIFDAVHAAKARGIDVVLADTAGRLPTQMHLMDEIAKIRRVITKAEATAPH
EVLLVLDGTIGQNAIGQVKAFDKAIGVTGLVITKLDGSAKGGVLAAIAKQCPKPVRYIGVGEQIEDLQPFSARAFAEALV
G

Nucleotide

• Length: 966 bp

>NTDB_id=72074 SHINM1_RS00185 WP_418744638.1 34450..35415(-) (pilA) [Fluviibacter phosphoraccumulans strain SHINM1]
ATTACCAAGGATACCCCTGCCACCATGTCTGACGCTACTGATAACCAGCCACGCCGCTCCTGGCGCGAACGTCTTTTTGC
CGGACTCACCAAGACCCGGCAGCAGATAGGCGGCTCGGTCCGCAGCCTGTTTGCCCGGGGTCAGGTGGATGACGAGCTCC
TGGAAGAGCTCGAAGCCCTGCTGCTTTCAGCCGATGTGGGCGTTGAAGCCACGATTATCCTCATTGAAGATCTTCGCCAG
CGCGCCCGCAAACACAAGCTGCAAACACCCGAGGCCATTCAATCGGCGATGGTCGATTGTCTGGCTGATTTACTCCAACC
GCTGGAAGCCCCATTACAGATCAGCCCACCCGCCGACTCGCCCTTTGTGATTATGGTGGCCGGCATCAATGGGGCGGGCA
AAACGACCACGCTGGGCAAGCTGGCGCATCATTTCCAGGCAGCTGGCCATTCCGTGCTGCTTGCCGCAGGCGATACCTTC
CGGGCCGCGGCACGGGAGCAACTGCAGGCCTGGGGTGCGCGCAATAATGTCACCGTGATTGCCCAGGAAGGCGGCGACCC
GTCGGCCGTTATTTTTGATGCGGTGCATGCCGCTAAAGCCCGGGGGATTGATGTGGTGCTGGCCGATACTGCCGGCCGCT
TACCAACCCAGATGCATCTGATGGACGAAATCGCCAAGATCCGCCGGGTCATTACCAAAGCCGAAGCCACTGCACCGCAT
GAAGTCTTGCTGGTGCTTGACGGCACGATTGGGCAAAACGCCATCGGTCAGGTCAAAGCTTTCGACAAGGCCATCGGCGT
TACTGGCCTGGTCATCACCAAACTGGATGGTTCCGCCAAAGGCGGCGTTCTTGCCGCGATTGCCAAGCAGTGTCCCAAAC
CCGTGCGTTACATCGGGGTAGGCGAACAAATCGAAGACTTGCAGCCTTTTAGCGCCCGCGCTTTCGCCGAAGCTTTAGTC
GGATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (121-320)

• SRP54-type protein, helical bundle domain (SRP54_N) (35-100)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	60.518	96.262	0.583