Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   PUW71_RS00225 Genome accession   NZ_CP118053
Coordinates   29976..30749 (+) Length   257 a.a.
NCBI ID   WP_264341317.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 24976..35749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW71_RS00205 (PUW71_00205) mreD 25755..26255 (+) 501 WP_024052913.1 rod shape-determining protein MreD -
  PUW71_RS00210 (PUW71_00210) - 26365..27555 (+) 1191 WP_024052912.1 CHAP domain-containing protein -
  PUW71_RS00215 (PUW71_00215) - 27688..28656 (+) 969 WP_024052911.1 ribose-phosphate diphosphokinase -
  PUW71_RS00220 (PUW71_00220) - 28811..29998 (+) 1188 WP_024052910.1 pyridoxal phosphate-dependent aminotransferase -
  PUW71_RS00225 (PUW71_00225) recO 29976..30749 (+) 774 WP_264341317.1 DNA repair protein RecO Machinery gene
  PUW71_RS00230 (PUW71_00230) plsX 30746..31744 (+) 999 Protein_23 phosphate acyltransferase PlsX -
  PUW71_RS00235 (PUW71_00235) - 31741..31986 (+) 246 WP_024052907.1 acyl carrier protein -
  PUW71_RS00240 (PUW71_00240) purC 32145..32852 (+) 708 WP_024052906.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 30073.51 Da        Isoelectric Point: 5.8518

>NTDB_id=720728 PUW71_RS00225 WP_264341317.1 29976..30749(+) (recO) [Streptococcus anginosus strain VSI40]
MLKSITSKGLVLYNRNFRENDKLVKIFTEQAGKRMFFVKHARNSKLNPVVQPLVVADFLMKINDDGLSYIDDYQEVTTFQ
HINHDLFTMAYATYVVALADASIQDNKIDSALFAFLQKTLELMEQGLDYEVLTNIFEIQILSRFGIYLNFHECCFCHRVG
LPFDFSFTYNGVLCSEHYNKDERQSHLDPNIPYLLDQFQAIQYSELETISLNPELKRQLRKVIDQIYEEYVGIHLKPKKF
IDSLGDWGEILKNKELK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=720728 PUW71_RS00225 WP_264341317.1 29976..30749(+) (recO) [Streptococcus anginosus strain VSI40]
ATGCTGAAATCCATCACAAGTAAAGGTTTGGTTCTCTATAATCGTAATTTCCGAGAAAATGATAAACTGGTCAAAATTTT
CACAGAGCAAGCTGGTAAGCGAATGTTTTTCGTGAAACATGCTAGAAATTCTAAGTTGAATCCGGTTGTCCAACCATTGG
TAGTGGCCGATTTTTTGATGAAAATAAATGATGACGGTTTGAGTTATATCGATGATTATCAAGAGGTTACGACTTTCCAG
CATATCAATCATGATTTGTTTACAATGGCTTATGCAACTTATGTGGTAGCTCTGGCAGACGCCAGTATTCAGGATAATAA
AATAGATTCGGCTCTCTTTGCTTTTTTGCAAAAAACGTTGGAATTGATGGAGCAGGGCTTGGATTATGAGGTGCTGACCA
ATATTTTTGAAATTCAAATTTTGTCACGTTTTGGAATTTATTTGAATTTCCATGAATGCTGCTTTTGCCACCGAGTAGGA
TTGCCGTTTGATTTTTCTTTTACTTATAACGGCGTTTTATGCTCGGAACATTACAACAAAGACGAGAGACAGAGTCATTT
GGATCCCAACATTCCTTACTTATTAGACCAATTTCAAGCGATTCAATATAGTGAATTGGAGACCATTTCTTTGAATCCTG
AGTTAAAACGACAATTACGAAAAGTGATTGATCAAATTTATGAAGAATATGTTGGGATTCATCTAAAGCCAAAAAAATTT
ATTGATTCTCTGGGAGACTGGGGAGAAATTTTAAAGAATAAGGAGTTGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-236)

Recombination protein O N terminal (RecO_N)

(4-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

74.51

99.222

0.739