Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PUW62_RS07800 Genome accession   NZ_CP118046
Coordinates   1553703..1555361 (-) Length   552 a.a.
NCBI ID   WP_164232036.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1548703..1560361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW62_RS07775 (PUW62_07775) - 1549202..1550155 (+) 954 WP_024052827.1 iron chelate uptake ABC transporter family permease subunit -
  PUW62_RS07780 (PUW62_07780) - 1550148..1551110 (+) 963 WP_024052828.1 iron chelate uptake ABC transporter family permease subunit -
  PUW62_RS07785 (PUW62_07785) - 1551112..1551864 (+) 753 WP_024052829.1 ATP-binding cassette domain-containing protein -
  PUW62_RS07790 (PUW62_07790) - 1551888..1552862 (+) 975 WP_024052830.1 siderophore ABC transporter substrate-binding protein -
  PUW62_RS07795 (PUW62_07795) - 1552925..1553656 (-) 732 WP_024052831.1 metallophosphoesterase -
  PUW62_RS07800 (PUW62_07800) recN 1553703..1555361 (-) 1659 WP_164232036.1 DNA repair protein RecN Machinery gene
  PUW62_RS07805 (PUW62_07805) - 1555369..1555800 (-) 432 WP_003031395.1 arginine repressor -
  PUW62_RS07810 (PUW62_07810) - 1555793..1556608 (-) 816 WP_024052833.1 TlyA family RNA methyltransferase -
  PUW62_RS07815 (PUW62_07815) - 1556574..1557476 (-) 903 WP_024052834.1 polyprenyl synthetase family protein -
  PUW62_RS07820 (PUW62_07820) - 1557473..1557685 (-) 213 WP_003030175.1 exodeoxyribonuclease VII small subunit -
  PUW62_RS07825 (PUW62_07825) xseA 1557663..1559003 (-) 1341 WP_024052835.1 exodeoxyribonuclease VII large subunit -
  PUW62_RS07830 (PUW62_07830) - 1559193..1559561 (-) 369 WP_224783697.1 conjugal transfer protein TraX -
  PUW62_RS07835 (PUW62_07835) - 1559580..1559927 (-) 348 WP_024052838.1 TraX family protein -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62354.64 Da        Isoelectric Point: 4.5608

>NTDB_id=720695 PUW62_RS07800 WP_164232036.1 1553703..1555361(-) (recN) [Streptococcus anginosus strain VSI52]
MLLEISIKNFAIIEEISLNFEQGMTVLTGETGAGKSIIIDAMNMMLGSRATTDVIRHGASKTEIEGLFAIEQSKALVEIF
EQQGLDMTEELIIRREIFQNGRSVSRINGQMVNLSVLRAVGQHLVDIHGQHDQEELMRPQLHIAMLDEFGADAFFKLKAD
YQQTFDQYRQLRKQILTIQKNQEENKARIDMLEYQIAEIEAANLKASEDLALNQERDKLLNHKQIADTLTNAYAMLDDEE
FSSLANIRSAMNDMEAIEDYDATYKEIATNLSESYYVLEDVTKRLEDILEDLDFDGGRLLEVESRLDLIYSITRKYGGQV
DDVLAYFEQISKEYALLTGKNLSSDDLNKELKKLEKDLVSLASSLSQARHELAQQLEAEIQQELQDLYMEKANFRVQFIK
GKFSRDGNEHVEFYISTNPGEDYKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SNGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSTVRLLSNDERVEEIAKMLAGENVTQAALTQARELLKK

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=720695 PUW62_RS07800 WP_164232036.1 1553703..1555361(-) (recN) [Streptococcus anginosus strain VSI52]
ATGTTACTTGAAATTTCCATTAAAAATTTTGCAATTATTGAAGAGATTTCCCTCAATTTTGAGCAAGGCATGACCGTTTT
GACAGGTGAAACAGGGGCTGGAAAGTCTATTATTATTGATGCTATGAACATGATGCTAGGAAGCCGCGCGACAACAGATG
TGATTCGTCACGGTGCATCAAAAACAGAGATTGAAGGGCTTTTTGCAATTGAGCAGAGTAAGGCTTTGGTTGAAATTTTT
GAGCAGCAAGGGCTTGATATGACAGAGGAGCTGATTATTCGGCGGGAAATTTTTCAAAATGGGCGTAGTGTCAGTCGTAT
TAATGGTCAAATGGTTAATTTGTCTGTCTTGCGAGCTGTTGGACAGCATTTGGTGGATATTCACGGTCAACACGATCAAG
AAGAACTCATGCGACCGCAGCTGCATATTGCCATGTTGGACGAGTTTGGAGCTGACGCATTTTTCAAGCTCAAAGCTGAT
TATCAACAGACTTTTGACCAGTATCGTCAGTTGCGTAAGCAGATCTTAACAATTCAAAAGAATCAAGAAGAAAATAAAGC
GCGGATTGACATGCTGGAATATCAAATTGCAGAGATTGAAGCAGCTAATTTAAAAGCTAGCGAAGATTTAGCTTTAAACC
AAGAGCGTGATAAGTTACTCAATCATAAGCAGATTGCGGACACTTTGACAAATGCCTATGCCATGCTGGATGATGAAGAA
TTTTCTAGTTTAGCGAATATTCGTTCTGCCATGAATGACATGGAAGCTATTGAAGACTATGACGCCACTTACAAAGAAAT
TGCGACCAACCTTTCTGAATCTTACTATGTGTTGGAAGATGTGACAAAGCGTTTGGAGGATATTCTAGAAGACTTGGATT
TTGATGGTGGCCGTCTCTTAGAAGTAGAAAGTCGCCTAGATTTAATCTATAGTATTACTCGCAAATACGGCGGTCAAGTA
GATGATGTCTTAGCTTATTTTGAGCAGATTTCTAAAGAATATGCTCTACTTACTGGGAAAAATCTTTCATCAGATGATTT
GAACAAAGAGCTGAAAAAGCTGGAAAAAGACTTGGTTTCTCTAGCAAGCAGTCTGAGTCAGGCTCGGCACGAATTAGCCC
AGCAGTTAGAAGCAGAGATTCAGCAAGAACTGCAAGACCTCTATATGGAAAAGGCGAATTTTCGAGTTCAATTTATCAAG
GGAAAATTTAGCCGCGATGGGAATGAACACGTTGAATTTTATATTTCGACTAATCCCGGTGAAGATTACAAACCGCTCGT
TAAGGTTGCTTCAGGTGGTGAATTGTCTCGTTTAATGTTGGCAATCAAGTCTGCTTTTTCTCGCAAGGAAGGCAAAACCA
GCATTGTCTTTGATGAAGTAGATACAGGTGTATCGGGACGTGTTGCACAAGCTATTGCTCAAAAGATTCATAAAATTGGC
TCGAACGGACAAGTCCTCGCAATTTCGCACCTACCACAAGTGATTGCCATTGCAGATTATCAATTTTTCATTGAGAAAAT
ATCTGATGAGCATTCGACCGTTTCAACTGTTCGCTTGTTATCAAATGATGAGCGTGTCGAAGAAATTGCCAAAATGTTGG
CGGGCGAAAATGTGACCCAAGCAGCCCTCACGCAGGCTAGAGAGCTCTTGAAAAAATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.035

100

0.455