Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   PUW62_RS05135 Genome accession   NZ_CP118046
Coordinates   1037709..1039943 (+) Length   744 a.a.
NCBI ID   WP_070241724.1    Uniprot ID   A0ABS3GD55
Organism   Streptococcus anginosus strain VSI52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1032709..1044943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW62_RS05105 (PUW62_05105) - 1033483..1034112 (+) 630 WP_024052370.1 hypothetical protein -
  PUW62_RS05110 (PUW62_05110) rnz 1034123..1035052 (+) 930 WP_070241726.1 ribonuclease Z -
  PUW62_RS05115 (PUW62_05115) - 1035099..1035707 (+) 609 WP_024052372.1 histidine phosphatase family protein -
  PUW62_RS05120 (PUW62_05120) - 1035717..1036472 (+) 756 WP_024052373.1 SDR family oxidoreductase -
  PUW62_RS05125 (PUW62_05125) - 1036482..1037219 (+) 738 WP_024052374.1 class I SAM-dependent methyltransferase -
  PUW62_RS05130 (PUW62_05130) - 1037197..1037613 (+) 417 WP_070672715.1 GNAT family N-acetyltransferase -
  PUW62_RS05135 (PUW62_05135) recJ 1037709..1039943 (+) 2235 WP_070241724.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  PUW62_RS05140 (PUW62_05140) - 1040080..1040877 (-) 798 WP_024052377.1 ABC transporter -
  PUW62_RS05145 (PUW62_05145) - 1040895..1041590 (-) 696 WP_024052378.1 ABC transporter ATP-binding protein -
  PUW62_RS05150 (PUW62_05150) - 1041594..1041959 (-) 366 WP_003024106.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 83666.60 Da        Isoelectric Point: 4.4845

>NTDB_id=720681 PUW62_RS05135 WP_070241724.1 1037709..1039943(+) (recJ) [Streptococcus anginosus strain VSI52]
MITSKYDWQIATNFSDESFIKKAKKLGLEASVANLVYQRGIQTEEALRDFLEPSLDQLHDPYELHDMDKAVTRIRQAIEN
YEQILIYGDYDADGMTSASIVKEALEQLGAECQVYLPNRFTDGYGPNASVYKYFIENQGISLIVTVDNGVAGHEAIELAQ
SMGVDVIVTDHHSMPEVLPDAYAIIHPEHPEADYPFKHLAGCGVAFKLATALLEEVQVELLDIVAIGTIADMVSLTDENR
ILVKYGLSVLKNTQRIGLQELFKIAGIQENEVDEETVGFQIAPRLNALGRLDDPNPAIELLTGFDEEEARDIALMINHKN
EERKEIVQKIYDEAKTMVDLNKPVQVLAGEGWNPGVLGIVAGRFLEELHQPVIVLNIENGLAKGSARSIEAVDIFEALDP
HRDLFVAFGGHAGAAGMTLEASKLEALSQVLVAYIEDNQVDLSTKNELFLDEELSLPDLTLETLKNFEKLAPFGMDNKKP
VFYLKDFKIENARTMGAGNTHLKLKISQADAVFEVVAFGLGNLATEFSQTKNLELAVTLSVNKWNGQTSLQLMLVDARVN
GIQLFNIRGKNAPLPENVPVLRFSEEMPNLEKSRAVVVYDLPERLNQLKVIIQQGHFEAIYFKNEIAQPYYLTGFGTRDQ
FAKFYKTIYQFPEFDIRYKLKELAAYLKIDPILLIKMIQIFEELDFVTIQDGVMQVNKKAEKKAIENSHIYQELKKTVKE
QELMALGTVQEIYDYLIEKDEFSN

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=720681 PUW62_RS05135 WP_070241724.1 1037709..1039943(+) (recJ) [Streptococcus anginosus strain VSI52]
ATGATTACATCAAAATATGATTGGCAGATTGCCACAAATTTTTCAGATGAGAGCTTTATTAAAAAAGCTAAAAAACTTGG
CTTGGAGGCTTCGGTAGCTAATCTGGTCTACCAGAGAGGAATCCAGACAGAAGAAGCACTGCGAGATTTTCTAGAGCCTA
GTTTGGACCAGCTGCATGATCCTTATGAACTGCATGATATGGATAAGGCAGTGACGCGCATTCGTCAAGCGATTGAAAAT
TATGAGCAGATCTTGATTTATGGAGATTATGATGCGGATGGCATGACTTCGGCTTCTATTGTTAAAGAAGCACTAGAACA
ACTTGGAGCAGAGTGTCAGGTCTATTTGCCCAATCGATTTACAGACGGTTATGGTCCTAACGCAAGTGTTTACAAGTATT
TTATTGAAAATCAGGGAATTTCACTCATCGTTACAGTGGATAATGGAGTTGCAGGACATGAAGCAATCGAACTAGCTCAG
TCTATGGGAGTGGATGTCATTGTGACGGATCACCATTCTATGCCAGAGGTACTTCCTGATGCTTATGCAATTATTCACCC
AGAACATCCGGAAGCTGATTATCCTTTTAAGCATTTAGCTGGTTGCGGTGTAGCTTTTAAGTTAGCGACTGCTCTTTTAG
AGGAAGTACAAGTAGAGTTGCTAGATATAGTCGCTATTGGAACTATTGCAGATATGGTCAGCCTAACAGATGAAAATCGC
ATTCTGGTCAAATATGGGCTAAGTGTCCTCAAAAACACTCAACGAATCGGCTTGCAGGAGCTTTTTAAGATTGCAGGTAT
TCAGGAAAATGAAGTGGATGAAGAAACAGTTGGTTTTCAGATAGCTCCCAGACTCAATGCTCTAGGTCGACTTGATGATC
CAAATCCTGCTATTGAACTTCTGACGGGCTTTGATGAGGAAGAAGCGCGTGACATTGCCCTTATGATTAACCATAAAAAT
GAAGAGCGCAAAGAAATTGTTCAGAAGATCTATGATGAAGCCAAGACCATGGTTGATCTCAATAAACCTGTTCAGGTTCT
AGCCGGTGAAGGTTGGAATCCAGGTGTTTTGGGAATTGTGGCAGGGCGGTTTTTGGAAGAATTACACCAGCCGGTCATCG
TCTTGAATATTGAGAATGGATTAGCAAAAGGCAGCGCCCGCAGCATTGAAGCAGTTGATATTTTTGAAGCGTTAGACCCT
CATCGAGATTTATTTGTGGCTTTTGGTGGGCATGCAGGGGCAGCTGGGATGACTCTAGAGGCCAGCAAGTTAGAAGCACT
CAGCCAGGTTTTGGTAGCATATATTGAAGATAATCAAGTGGATTTGTCCACTAAGAATGAGCTCTTTTTGGATGAGGAAT
TATCCTTGCCAGATTTGACACTAGAGACCCTCAAAAACTTTGAAAAGTTAGCTCCTTTTGGCATGGACAATAAAAAGCCT
GTTTTTTATTTGAAAGATTTTAAAATTGAAAATGCCCGCACCATGGGAGCAGGGAATACTCACCTTAAGCTGAAAATTTC
TCAGGCTGACGCAGTTTTTGAGGTCGTAGCTTTTGGTCTAGGTAATCTTGCGACAGAATTTTCCCAAACTAAAAACTTAG
AGCTGGCGGTTACGCTGTCGGTCAATAAATGGAATGGTCAAACTAGTCTCCAGCTTATGCTGGTGGATGCTAGGGTCAAT
GGGATTCAGCTCTTTAATATCCGAGGTAAAAATGCTCCTTTACCTGAAAATGTGCCCGTCCTGCGTTTTTCAGAAGAAAT
GCCTAATTTGGAAAAGAGCAGAGCAGTTGTGGTGTATGACTTGCCTGAACGCCTAAATCAGCTCAAAGTAATCATTCAGC
AAGGACATTTTGAAGCAATTTACTTTAAAAATGAGATTGCTCAGCCCTATTATCTGACAGGTTTCGGAACGAGAGACCAG
TTTGCCAAATTCTATAAAACAATTTATCAATTTCCAGAGTTTGACATTCGTTATAAGCTCAAAGAACTGGCTGCTTATCT
CAAGATTGACCCAATTCTACTCATAAAGATGATTCAGATATTTGAAGAGCTGGACTTTGTGACAATTCAAGATGGAGTGA
TGCAAGTAAACAAAAAAGCAGAAAAAAAAGCTATTGAAAACAGCCATATTTATCAAGAACTGAAGAAAACAGTCAAGGAG
CAGGAGCTTATGGCTCTAGGAACTGTGCAGGAAATTTATGATTATCTGATAGAAAAAGATGAATTTTCAAACTAA

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-434)

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(451-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(590-734)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

76.757

99.462

0.763
  recJ Bacillus subtilis subsp. subtilis str. 168

38.015

100

0.397