Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   NW941_RS07805 Genome accession   NZ_CP102963
Coordinates   1612937..1613383 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 40-B-50     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1607937..1618383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW941_RS07775 (NW941_07805) gcvPA 1608863..1610209 (-) 1347 WP_258411690.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  NW941_RS07780 (NW941_07810) gcvT 1610229..1611320 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  NW941_RS07785 (NW941_07815) - 1611479..1612003 (-) 525 WP_001015120.1 shikimate kinase -
  NW941_RS07790 (NW941_07820) - 1611993..1612139 (-) 147 WP_001789879.1 hypothetical protein -
  NW941_RS07795 (NW941_07825) comGF 1612236..1612733 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  NW941_RS07800 (NW941_07830) comGE 1612651..1612950 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  NW941_RS07805 (NW941_07835) comGD 1612937..1613383 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  NW941_RS07810 (NW941_07840) comGC 1613361..1613672 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  NW941_RS07815 (NW941_07845) comGB 1613686..1614756 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  NW941_RS07820 (NW941_07850) comGA 1614728..1615702 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  NW941_RS07825 (NW941_07855) - 1615754..1616377 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  NW941_RS07830 (NW941_07860) - 1616374..1616703 (-) 330 WP_111125527.1 MTH1187 family thiamine-binding protein -
  NW941_RS07835 (NW941_07865) - 1616703..1617689 (-) 987 WP_000161314.1 ROK family glucokinase -
  NW941_RS07840 (NW941_07870) - 1617686..1617889 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=720665 NW941_RS07805 WP_001788899.1 1612937..1613383(-) (comGD) [Staphylococcus aureus strain 40-B-50]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=720665 NW941_RS07805 WP_001788899.1 1612937..1613383(-) (comGD) [Staphylococcus aureus strain 40-B-50]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1