Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   PUW62_RS02515 Genome accession   NZ_CP118046
Coordinates   507518..508120 (-) Length   200 a.a.
NCBI ID   WP_274997333.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI52     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 502518..513120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW62_RS02500 (PUW62_02500) nadE 502738..503562 (+) 825 WP_024052124.1 ammonia-dependent NAD(+) synthetase -
  PUW62_RS02505 (PUW62_02505) pepC 503710..505047 (+) 1338 WP_024052123.1 aminopeptidase C -
  PUW62_RS02510 (PUW62_02510) pbp1a 505357..507525 (-) 2169 WP_024052122.1 penicillin-binding protein PBP1A -
  PUW62_RS02515 (PUW62_02515) recU 507518..508120 (-) 603 WP_274997333.1 Holliday junction resolvase RecU Machinery gene
  PUW62_RS02520 (PUW62_02520) - 508190..508717 (+) 528 WP_024052120.1 DUF1273 domain-containing protein -
  PUW62_RS02525 (PUW62_02525) gpsB 508787..509128 (+) 342 WP_024052119.1 cell division regulator GpsB -
  PUW62_RS02535 (PUW62_02535) - 509564..510718 (+) 1155 WP_042754017.1 class I SAM-dependent RNA methyltransferase -
  PUW62_RS02540 (PUW62_02540) - 510731..512227 (+) 1497 WP_024052116.1 cell division site-positioning protein MapZ family protein -
  PUW62_RS02545 (PUW62_02545) ahpC 512330..512896 (+) 567 WP_024052115.1 alkyl hydroperoxide reductase subunit C -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23159.89 Da        Isoelectric Point: 10.0291

>NTDB_id=720648 PUW62_RS02515 WP_274997333.1 507518..508120(-) (recU) [Streptococcus anginosus strain VSI52]
MVNYPHKVPSRNSLRLPKKKSVDFANWGMSFEKMINETNDYYLSHDLAVIHKKPTPIQIVKVDYPRRSRAKIVEAYFRQA
STTDYSGVYQGHYIDFEAKETHQKASMPMKNFHAHQIKHMEQVVKQGGICFVLLHFSALKLTYLLPAPYLINFFKIDKGK
KSMPLDYIQKHGYSISQNGLPSIPYLEIIQQNLLGGKINE

Nucleotide


Download         Length: 603 bp        

>NTDB_id=720648 PUW62_RS02515 WP_274997333.1 507518..508120(-) (recU) [Streptococcus anginosus strain VSI52]
ATGGTCAACTATCCACATAAAGTTCCCTCTCGAAATTCATTAAGACTTCCCAAAAAGAAGTCCGTTGACTTTGCGAATTG
GGGAATGTCGTTTGAAAAAATGATCAATGAAACGAATGATTATTATCTTAGTCACGATTTAGCGGTCATTCACAAGAAAC
CAACCCCTATTCAGATTGTAAAAGTGGATTATCCCAGACGTAGTCGGGCAAAAATTGTTGAAGCCTACTTTCGACAAGCC
TCTACAACAGACTATTCTGGTGTCTATCAAGGACATTATATAGATTTTGAAGCAAAAGAAACACATCAAAAGGCTTCCAT
GCCGATGAAAAATTTTCATGCTCATCAAATCAAGCACATGGAACAAGTCGTCAAACAAGGAGGAATTTGTTTCGTTTTAT
TGCACTTTTCAGCCTTAAAATTGACATATCTGCTTCCTGCTCCTTATTTAATTAACTTCTTCAAGATTGACAAGGGGAAA
AAGTCCATGCCACTTGACTACATTCAAAAGCATGGATATTCTATCTCACAGAATGGTCTTCCTAGCATTCCGTATCTTGA
AATCATTCAACAAAATTTACTAGGTGGTAAAATAAATGAATAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.249

100

0.505