Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   NW973_RS07960 Genome accession   NZ_CP102961
Coordinates   1637453..1638523 (-) Length   356 a.a.
NCBI ID   WP_000776422.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 03-RR-88     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1632453..1643523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW973_RS07920 (NW973_07920) gcvPA 1632630..1633976 (-) 1347 WP_000019690.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  NW973_RS07925 (NW973_07925) gcvT 1633996..1635087 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  NW973_RS07930 (NW973_07930) - 1635246..1635770 (-) 525 WP_001015121.1 shikimate kinase -
  NW973_RS07935 (NW973_07935) - 1635760..1635906 (-) 147 WP_001789879.1 hypothetical protein -
  NW973_RS07940 (NW973_07940) comGF 1636003..1636500 (-) 498 WP_001789864.1 competence type IV pilus minor pilin ComGF Machinery gene
  NW973_RS07945 (NW973_07945) comGE 1636418..1636717 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  NW973_RS07950 (NW973_07950) comGD 1636704..1637150 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  NW973_RS07955 (NW973_07955) comGC 1637128..1637439 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  NW973_RS07960 (NW973_07960) comGB 1637453..1638523 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  NW973_RS07965 (NW973_07965) comGA 1638495..1639469 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  NW973_RS07970 (NW973_07970) - 1639521..1640144 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  NW973_RS07975 (NW973_07975) - 1640141..1640470 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  NW973_RS07980 (NW973_07980) - 1640470..1641456 (-) 987 WP_000161315.1 ROK family glucokinase -
  NW973_RS07985 (NW973_07985) - 1641453..1641656 (-) 204 WP_258410696.1 YqgQ family protein -
  NW973_RS07990 (NW973_07990) - 1641637..1643100 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41447.84 Da        Isoelectric Point: 10.0606

>NTDB_id=720584 NW973_RS07960 WP_000776422.1 1637453..1638523(-) (comGB) [Staphylococcus aureus strain 03-RR-88]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=720584 NW973_RS07960 WP_000776422.1 1637453..1638523(-) (comGB) [Staphylococcus aureus strain 03-RR-88]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCTTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTGTATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(27-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

100

100

1
  comGB Staphylococcus aureus N315

100

100

1