Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   NW973_RS04485 Genome accession   NZ_CP102961
Coordinates   933552..934538 (+) Length   328 a.a.
NCBI ID   WP_258411056.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 03-RR-88     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 928552..939538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW973_RS04460 (NW973_04460) opp4B 928765..929727 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  NW973_RS04465 (NW973_04465) opp4C 929739..930620 (+) 882 WP_001180264.1 oligopeptide ABC transporter permease -
  NW973_RS04470 (NW973_04470) trpS 930662..931651 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  NW973_RS04475 (NW973_04475) spxA 931946..932341 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  NW973_RS04480 (NW973_04480) mecA 932712..933431 (+) 720 WP_001217728.1 adaptor protein MecA -
  NW973_RS04485 (NW973_04485) coiA 933552..934538 (+) 987 WP_258411056.1 competence protein CoiA family protein Machinery gene
  NW973_RS04490 (NW973_04490) pepF 934586..936394 (+) 1809 WP_258411057.1 oligoendopeptidase F -
  NW973_RS04495 (NW973_04495) yjbH 936854..937660 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  NW973_RS04500 (NW973_04500) - 937683..938048 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  NW973_RS04505 (NW973_04505) - 938152..938745 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  NW973_RS04510 (NW973_04510) - 938931..939278 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38779.46 Da        Isoelectric Point: 9.6054

>NTDB_id=720573 NW973_RS04485 WP_258411056.1 933552..934538(+) (coiA) [Staphylococcus aureus strain 03-RR-88]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKLGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKIIELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGFIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILL

Nucleotide


Download         Length: 987 bp        

>NTDB_id=720573 NW973_RS04485 WP_258411056.1 933552..934538(+) (coiA) [Staphylococcus aureus strain 03-RR-88]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAACTGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTATTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCCGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTTTATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTGGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAACCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus N315

97.866

100

0.979
  coiA Staphylococcus aureus MW2

97.256

100

0.973