Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   NW949_RS07620 Genome accession   NZ_CP102960
Coordinates   1601771..1602457 (-) Length   228 a.a.
NCBI ID   WP_258415268.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 07-G-D     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1596771..1607457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW949_RS07600 (NW949_07600) rpsT 1597685..1597936 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  NW949_RS07605 (NW949_07605) holA 1597981..1598955 (-) 975 WP_001282568.1 DNA polymerase III subunit delta -
  NW949_RS07610 (NW949_07610) comEC 1599012..1601213 (-) 2202 WP_258415267.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NW949_RS07615 (NW949_07615) - 1601218..1601679 (-) 462 WP_000439693.1 ComE operon protein 2 -
  NW949_RS07620 (NW949_07620) comEA 1601771..1602457 (-) 687 WP_258415268.1 ComEA family DNA-binding protein Machinery gene
  NW949_RS07625 (NW949_07625) - 1602497..1603213 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  NW949_RS07630 (NW949_07630) rsfS 1603216..1603569 (-) 354 WP_001088020.1 ribosome silencing factor -
  NW949_RS07635 (NW949_07635) yqeK 1603570..1604154 (-) 585 WP_001019320.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  NW949_RS07640 (NW949_07640) nadD 1604144..1604713 (-) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  NW949_RS07645 (NW949_07645) yhbY 1604716..1605006 (-) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  NW949_RS07650 (NW949_07650) aroE 1605010..1605816 (-) 807 WP_000666761.1 shikimate dehydrogenase -
  NW949_RS07655 (NW949_07655) yqeH 1605830..1606930 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25878.55 Da        Isoelectric Point: 9.6751

>NTDB_id=720546 NW949_RS07620 WP_258415268.1 1601771..1602457(-) (comEA) [Staphylococcus aureus strain 07-G-D]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVSGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=720546 NW949_RS07620 WP_258415268.1 1601771..1602457(-) (comEA) [Staphylococcus aureus strain 07-G-D]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTTCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

99.559

99.561

0.991
  comEA Staphylococcus aureus MW2

96.916

99.561

0.965