Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   PUW46_RS03490 Genome accession   NZ_CP118044
Coordinates   727867..729648 (+) Length   593 a.a.
NCBI ID   WP_275015067.1    Uniprot ID   -
Organism   Staphylococcus aureus strain VSI56     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 722867..734648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW46_RS03480 (PUW46_03480) ltaS 723762..725702 (+) 1941 WP_275015066.1 polyglycerol-phosphate lipoteichoic acid synthase LtaS -
  PUW46_RS03485 (PUW46_03485) - 725972..727855 (+) 1884 WP_001792709.1 ABC-F family ATP-binding cassette domain-containing protein -
  PUW46_RS03490 (PUW46_03490) recQ 727867..729648 (+) 1782 WP_275015067.1 DNA helicase RecQ Machinery gene
  PUW46_RS03495 (PUW46_03495) - 729870..730847 (+) 978 WP_000589259.1 ABC transporter ATP-binding protein -
  PUW46_RS03500 (PUW46_03500) - 730840..732354 (+) 1515 WP_000180991.1 ABC transporter permease/substrate-binding protein -
  PUW46_RS03505 (PUW46_03505) hisC 732594..733652 (+) 1059 WP_275015075.1 histidinol-phosphate transaminase -
  PUW46_RS03510 (PUW46_03510) - 733947..734489 (+) 543 WP_000197271.1 5'-3'-deoxyribonucleotidase -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 68169.13 Da        Isoelectric Point: 6.9431

>NTDB_id=720546 PUW46_RS03490 WP_275015067.1 727867..729648(+) (recQ) [Staphylococcus aureus strain VSI56]
MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQ
AAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFT
LPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKTHDEDAGIIYCSTRKQVE
ELQEALESQKIESVIYHAGLSNKEREEAQNNFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRD
GLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDK
SYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEI
LMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPAS
KQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=720546 PUW46_RS03490 WP_275015067.1 727867..729648(+) (recQ) [Staphylococcus aureus strain VSI56]
ATGATGCAACAAACATTATCGCATTACTTTGGGTATGAAACGTTTCGACCAGGACAAGAAGAAATTATTAGCAAAGTATT
AGACCATCGTAATGTGCTTGGTGTCTTACCAACTGGTGGAGGTAAGTCTATATGCTATCAAGTACCAGGTTTATTGTTAG
GTGGTACAACAATTGTAATAAGTCCACTAATATCATTAATGAAAGATCAAGTGGATCAATTAAAAGCGATGGGAATTCAA
GCTGCTTTTTTAAATAGTAGTTTGACTCAAAAAGAGCAACAACGTATTGAAAAAGCATTATCAAATGGAGAAATTCAATT
TTTGTATGTTGCACCAGAACGATTTGAAAACCGATATTTTTTAAATATGCTTCAGCGTATAAAGATTCACTTAGTCGCGT
TTGATGAAGCGCATTGTATTTCTAAATGGGGTCATGATTTCAGGCCGAGTTACCAAAATGTTATTTCAAAAGTATTTACG
TTACCTCAAGATTTTACAATAATAGCGTTGACAGCAACTGCCACGGTTGAAGTACAGCAAGATATTAGAGAAAAGTTAAA
TATCGCTCAAACTGATCAAATTAAAACGAGTACTAAGCGTAGAAACTTAATTTTTAAAGTAAATCCTACTTATCAACGTC
AAAAATTTATATTGGATTATATTAAAACACATGATGAAGATGCAGGTATTATTTATTGTTCTACACGTAAGCAAGTTGAA
GAGCTTCAAGAAGCCTTAGAAAGCCAGAAAATTGAAAGTGTTATATATCATGCAGGTTTGAGCAATAAAGAAAGAGAAGA
AGCGCAGAATAATTTCTTATTTGATCGTGTTAAAGTAGTCGTTGCTACAAATGCTTTTGGTATGGGTATTGATAAATCCA
ATGTACGTTTTGTTATTCATTATAATATGCCTGGAGATTTAGAATCTTATTATCAAGAAGCCGGTCGTGCAGGTCGTGAC
GGGTTGAAAAGTGAATGTATTTTGTTATTTAGCGAACGCGATATCAATTTACACGAGTATTTTATAACAGTCTCTCAAGC
TGATGATGACTATAAAGATAAAATGGGCGAAAAGTTAACTAAAATGATTCAATATACAAAAACAAAAAAATGTCTAGAAG
CAACAATTGTCCATTATTTTGAACCGAATGAAAAATTAGAAGAATGTGAACAATGTAGTAATTGTGTTCAACAAGATAAA
TCATATAATATGACACAAGAAGCTAAGATGATTATTAGTTGCATCGCTCGTATGAAACAACAAGAGAGTTATAGTGTTAT
CATTCAAGTGCTAAGAGGAGAGTCAACAGATTATATTAAGTACAAAGGTTATGATCAAATTTCAACCCATGGTTTAATGA
AAGGTTACACAACATCAGAATTAAGTCACTTAATAGATGAATTAAGATTCAAAGGGTTCTTAAATGAAAATGATGAAATA
TTAATGTGTGATACTTCAATTAAAAAATTACTCAGTAATGAAGTAGAAGTATTCACAACACCATTTAAGCAAAAAGCGAC
TGAAAAAGTATTTATAAATACGGTTGAAGGGGTTGACCGAGTATTATTCAGTCAGTTGGTAGAAGTTCGTAAAAAGTTAA
GTGACAAATTAACGATAGCACCTGTAAGTATATTTTCTGATTACACGTTGGAGGAATTTGCTAAACGTAAGCCTGCTTCG
AAACAAGATATGATTAATATTGATGGCGTAGGTAGTTACAAATTAAAACATTATTGTCCAGCATTTTTAGAAACGATTCA
AAATTATAAAGCCAAAGTATAG

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(333-395)

RQC domain (RQC)

(400-500)

Helicase conserved C-terminal domain (Helicase_C)

(217-320)

DEAD/DEAH box helicase (DEAD)

(17-178)

HRDC domain (HRDC)

(521-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

42.542

99.494

0.423