Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   JQN53_RS08910 Genome accession   NZ_AP024301
Coordinates   1678398..1678865 (-) Length   155 a.a.
NCBI ID   WP_011173597.1    Uniprot ID   Q72IE6
Organism   Thermus thermophilus strain HB5002     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1673398..1683865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JQN53_RS08885 (TthHB5002_17750) - 1673606..1674019 (+) 414 WP_011173591.1 PaaI family thioesterase -
  JQN53_RS08890 (TthHB5002_17760) - 1673993..1674955 (-) 963 WP_203971089.1 dipeptidase -
  JQN53_RS08895 (TthHB5002_17770) uvrC 1674978..1676750 (+) 1773 WP_182223903.1 excinuclease ABC subunit UvrC -
  JQN53_RS08900 (TthHB5002_17780) - 1676801..1677724 (-) 924 WP_143591504.1 ribose-phosphate pyrophosphokinase -
  JQN53_RS08905 (TthHB5002_17790) mtnN 1677739..1678401 (-) 663 WP_024118679.1 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase -
  JQN53_RS08910 (TthHB5002_17800) luxS 1678398..1678865 (-) 468 WP_011173597.1 S-ribosylhomocysteine lyase Regulator
  JQN53_RS08915 (TthHB5002_17810) guaA 1678980..1680491 (+) 1512 WP_011228757.1 glutamine-hydrolyzing GMP synthase -
  JQN53_RS08920 (TthHB5002_17820) - 1680491..1681054 (+) 564 WP_011173599.1 Uma2 family endonuclease -
  JQN53_RS08925 (TthHB5002_17830) - 1681079..1681366 (+) 288 WP_011228759.1 glutamine synthetase/cystathionine beta-lyase binding protein -
  JQN53_RS08930 (TthHB5002_17840) - 1681366..1681752 (+) 387 WP_011228760.1 VOC family protein -
  JQN53_RS08935 (TthHB5002_17850) rnhA 1681749..1682249 (+) 501 WP_143591510.1 ribonuclease HI -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16823.34 Da        Isoelectric Point: 6.7534

>NTDB_id=72054 JQN53_RS08910 WP_011173597.1 1678398..1678865(-) (luxS) [Thermus thermophilus strain HB5002]
MAEVESFSLDHTKVKAPYVRLAGRKALAGGVVEKYDLRLAQPNREALPTGALHTLEHLLAGYLRDHLPGVIDLSPMGCRT
GFYLVVEGPVGEEKVLEAFAQALKDVLAHEGEVPGASFRECGNYRDHDLPGAKAWAEKVLKAGLRVQATVPLEAR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=72054 JQN53_RS08910 WP_011173597.1 1678398..1678865(-) (luxS) [Thermus thermophilus strain HB5002]
ATGGCCGAGGTGGAGAGCTTCAGCCTGGACCACACCAAGGTCAAGGCCCCCTACGTGCGCCTGGCGGGGAGGAAGGCCCT
CGCGGGGGGCGTGGTGGAGAAGTACGACCTGAGGCTTGCCCAGCCCAACCGGGAGGCCCTGCCCACGGGGGCCTTGCACA
CCCTGGAGCACCTCCTCGCAGGGTATTTGCGGGACCACCTCCCGGGGGTCATTGACCTCTCCCCCATGGGCTGCCGCACG
GGGTTTTACCTGGTGGTGGAAGGCCCCGTGGGGGAGGAAAAGGTCCTCGAGGCCTTCGCCCAGGCCTTGAAGGACGTCCT
CGCCCACGAGGGGGAGGTCCCCGGGGCGAGCTTCAGGGAGTGCGGCAACTACCGGGACCATGACCTTCCTGGCGCCAAGG
CCTGGGCGGAGAAGGTGCTAAAGGCGGGGCTTAGGGTCCAGGCCACCGTTCCCCTGGAGGCGAGGTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(3-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q72IE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.558

99.355

0.413

Multiple sequence alignment