Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   PUW57_RS06315 Genome accession   NZ_CP118043
Coordinates   1200551..1201339 (+) Length   262 a.a.
NCBI ID   WP_000090703.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain VSI63     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1195551..1206339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW57_RS06285 (PUW57_06285) - 1196635..1197027 (+) 393 WP_000781331.1 CidA/LrgA family protein -
  PUW57_RS06290 (PUW57_06290) - 1197008..1197703 (+) 696 WP_000224248.1 LrgB family protein -
  PUW57_RS06295 (PUW57_06295) - 1197772..1198395 (+) 624 WP_000612517.1 DUF3862 domain-containing protein -
  PUW57_RS06300 (PUW57_06300) - 1198797..1198943 (-) 147 WP_000759859.1 hypothetical protein -
  PUW57_RS06305 (PUW57_06305) - 1199545..1199691 (-) 147 WP_001022154.1 hypothetical protein -
  PUW57_RS06310 (PUW57_06310) - 1199724..1200158 (+) 435 WP_000733480.1 hypothetical protein -
  PUW57_RS06315 (PUW57_06315) irvR 1200551..1201339 (+) 789 WP_000090703.1 S24 family peptidase Regulator
  PUW57_RS06320 (PUW57_06320) - 1201348..1201599 (+) 252 WP_000522436.1 hypothetical protein -
  PUW57_RS06325 (PUW57_06325) - 1201989..1202177 (+) 189 WP_001866372.1 hypothetical protein -
  PUW57_RS06330 (PUW57_06330) - 1202174..1202935 (+) 762 WP_228305580.1 Abi family protein -
  PUW57_RS06335 (PUW57_06335) - 1203054..1204130 (+) 1077 WP_000323186.1 tyrosine-type recombinase/integrase -
  PUW57_RS06345 (PUW57_06345) rpsA 1204310..1205512 (-) 1203 WP_001001614.1 30S ribosomal protein S1 -
  PUW57_RS06360 (PUW57_06360) - 1205856..1206086 (-) 231 WP_000037098.1 DUF2969 domain-containing protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29802.01 Da        Isoelectric Point: 9.0802

>NTDB_id=720492 PUW57_RS06315 WP_000090703.1 1200551..1201339(+) (irvR) [Streptococcus agalactiae strain VSI63]
MARGRGKLTPQEIEALRFFSSKLNDLLNETSTKQVELSKATGIPPSTLTGYVKGTSLPIPGNVQKIADYFGLMKSDIDPR
FAPRKKKHELKIPTSPLVNKITKTVVELNVPRKQQVLDYATEQLKEQKNKITSIEETLYEYKVYEKLSAGTGYGYFGDGN
YDTVFYDEQLDYDFASWVFGDSMEPTYLNGEIALIKQTGFDYDGAIYAVEWDGQTYIKKVFREKGGLRLVSLNKKYKDKF
APFSEDPRIIGKVVGNFMPKEY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=720492 PUW57_RS06315 WP_000090703.1 1200551..1201339(+) (irvR) [Streptococcus agalactiae strain VSI63]
ATGGCAAGAGGAAGAGGTAAATTAACTCCTCAAGAAATAGAGGCATTAAGATTCTTTTCGAGCAAACTAAATGATTTGCT
CAATGAAACAAGTACAAAGCAAGTCGAACTCTCAAAGGCTACAGGAATACCACCAAGCACTCTTACAGGTTATGTTAAAG
GAACATCTTTACCTATTCCAGGTAACGTCCAAAAAATAGCAGATTACTTTGGATTAATGAAGTCTGATATAGACCCAAGA
TTTGCACCTCGTAAGAAAAAACATGAACTCAAAATTCCTACTTCTCCGCTCGTTAACAAAATTACTAAGACGGTTGTTGA
ATTAAATGTTCCACGTAAACAACAAGTACTAGATTATGCTACAGAGCAACTAAAAGAGCAAAAAAATAAAATAACCTCCA
TAGAAGAAACGTTGTACGAATATAAAGTATATGAAAAACTCTCTGCTGGTACAGGGTATGGTTACTTTGGCGACGGAAAT
TACGACACTGTCTTTTATGATGAGCAATTAGACTATGATTTTGCTTCTTGGGTTTTCGGTGATTCAATGGAACCGACTTA
TCTTAATGGCGAAATCGCACTAATAAAGCAGACAGGCTTTGATTATGATGGAGCTATATATGCTGTCGAATGGGATGGAC
AAACTTATATTAAGAAAGTATTTAGAGAAAAAGGTGGTTTAAGATTAGTTTCTTTAAACAAAAAATACAAAGATAAGTTT
GCACCTTTTAGTGAAGATCCACGTATCATCGGAAAAGTTGTTGGCAATTTTATGCCAAAAGAATATTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(33-71)

Peptidase S24-like (Peptidase_S24)

(165-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

34.211

100

0.397