Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EoCCA6_RS19925 Genome accession   NZ_AP019007
Coordinates   4178183..4178809 (+) Length   208 a.a.
NCBI ID   WP_152084126.1    Uniprot ID   -
Organism   Enterobacter oligotrophicus strain CCA6     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4173183..4183809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EoCCA6_RS19905 - 4173585..4175345 (-) 1761 WP_152084123.1 AAA family ATPase -
  EoCCA6_RS19910 matP 4175532..4175984 (+) 453 WP_152084124.1 macrodomain Ter protein MatP -
  EoCCA6_RS19915 ompA 4176048..4177100 (-) 1053 WP_152084125.1 porin OmpA -
  EoCCA6_RS19920 sulA 4177456..4177965 (-) 510 WP_152084490.1 SOS-induced cell division inhibitor SulA -
  EoCCA6_RS19925 sxy/tfoX 4178183..4178809 (+) 627 WP_152084126.1 TfoX/Sxy family DNA transformation protein Regulator
  EoCCA6_RS19930 yccS 4178766..4180928 (-) 2163 WP_152084127.1 YccS family putative transporter -
  EoCCA6_RS19935 - 4180948..4181394 (-) 447 WP_152084128.1 YccF domain-containing protein -
  EoCCA6_RS19940 helD 4181518..4183572 (+) 2055 WP_152084129.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23848.31 Da        Isoelectric Point: 8.2548

>NTDB_id=72049 EoCCA6_RS19925 WP_152084126.1 4178183..4178809(+) (sxy/tfoX) [Enterobacter oligotrophicus strain CCA6]
MKKISYDRIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKHASSFLTLMKRGRPVLLN
YYRVDDGLWQNRDELLKLSSSALDAARKERYQRHQRNRLKDLPNLTFQIEVLLCEAGITNEETLRELGAKTSWLKIRSKN
KGLSIKVLFALEGAIEGMHEAALPADIRRELTEWFNALPEAQESHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=72049 EoCCA6_RS19925 WP_152084126.1 4178183..4178809(+) (sxy/tfoX) [Enterobacter oligotrophicus strain CCA6]
ATGAAAAAGATATCTTATGATCGGATTTATAAATCGCAGGAATACCTTTCTCCATTAGGGGAAATTCATCATCGCGCGCT
TTTTGGAGGATATACCCTTGCGGTGGATGATGCGGTTTTCGCCATGGTGTCGGACGGGGAGCTCTATCTTCGGGCCTGTG
AAGAGAGCGCAAAATACTGTGTAAAACACGCCTCTTCATTTTTGACGTTAATGAAGCGGGGCCGTCCTGTCCTTCTTAAC
TATTACCGCGTGGATGACGGGCTTTGGCAGAACAGGGATGAGCTGCTCAAACTTTCATCGTCTGCACTTGATGCGGCCAG
AAAAGAGCGGTATCAGCGTCACCAGCGGAATCGGCTTAAAGATCTGCCGAACCTGACATTTCAGATTGAAGTTCTGCTCT
GTGAAGCGGGTATAACAAATGAAGAGACGTTACGGGAACTGGGCGCAAAAACGAGCTGGCTGAAAATACGATCAAAAAAT
AAGGGGCTGAGCATTAAGGTGCTGTTTGCGCTTGAAGGGGCAATTGAGGGAATGCACGAAGCGGCGCTCCCGGCGGACAT
TCGCCGGGAGCTAACGGAATGGTTTAATGCACTGCCTGAGGCTCAGGAGAGTCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.606

97.596

0.582

Multiple sequence alignment