Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptA   Type   Regulator
Locus tag   PUW57_RS01800 Genome accession   NZ_CP118043
Coordinates   302276..303010 (+) Length   244 a.a.
NCBI ID   WP_000589162.1    Uniprot ID   Q8E1S3
Organism   Streptococcus agalactiae strain VSI63     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 297276..308010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW57_RS01785 (PUW57_01785) - 298198..299628 (+) 1431 WP_001217276.1 helix-turn-helix domain-containing protein -
  PUW57_RS01790 (PUW57_01790) recP/tkt 299753..301738 (+) 1986 WP_000141866.1 transketolase Machinery gene
  PUW57_RS01795 (PUW57_01795) - 301951..302256 (+) 306 WP_000711207.1 bacteriocin immunity protein -
  PUW57_RS01800 (PUW57_01800) pptA 302276..303010 (+) 735 WP_000589162.1 ABC transporter ATP-binding protein Regulator
  PUW57_RS01805 (PUW57_01805) - 303014..304618 (+) 1605 WP_001104587.1 ABC transporter permease -
  PUW57_RS01810 (PUW57_01810) - 304826..306211 (-) 1386 WP_001865878.1 PTS transporter subunit EIIC -
  PUW57_RS01815 (PUW57_01815) proB 306352..307155 (+) 804 WP_000820352.1 glutamate 5-kinase -

Sequence


Protein


Download         Length: 244 a.a.        Molecular weight: 27505.68 Da        Isoelectric Point: 4.7523

>NTDB_id=720445 PUW57_RS01800 WP_000589162.1 302276..303010(+) (pptA) [Streptococcus agalactiae strain VSI63]
MIKFEHVSKVYGEKEALSDLTLSVKDGEIFGLIGHNGAGKTTTISILTSIIDATYGQVYIDDLLLTEHRDQIKKKIGYVP
DSPDIFLNLTAEEYWYFLAKIYDVAPEDIEARITKLVDIFELEEQRYNPIESFSHGMRQKVIVIGALLPNPDIWILDEPL
TGLDPQASFDLKEMMKEHAKNGKTVIFSTHVLAVAEQLCDRIGILKQGKLIFVGSLGELKMKYPDKDLETIYLELAGRQA
SREG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=720445 PUW57_RS01800 WP_000589162.1 302276..303010(+) (pptA) [Streptococcus agalactiae strain VSI63]
ATGATTAAGTTTGAACATGTTTCGAAAGTATACGGAGAAAAAGAAGCTCTCAGTGATTTAACCCTCTCTGTTAAAGATGG
TGAGATTTTTGGATTAATAGGTCACAATGGAGCAGGAAAAACAACGACAATTAGTATTCTAACATCTATTATTGATGCAA
CTTATGGCCAAGTCTATATTGATGACCTACTTTTGACAGAACATCGTGACCAAATTAAGAAAAAAATAGGTTATGTACCG
GACTCGCCAGATATTTTCTTAAATTTAACCGCAGAGGAATACTGGTACTTTTTAGCTAAAATTTATGACGTTGCCCCAGA
AGATATTGAAGCACGTATCACAAAATTGGTAGACATATTTGAACTAGAGGAGCAACGCTATAATCCTATTGAAAGTTTTT
CACATGGTATGCGTCAAAAAGTCATTGTTATAGGTGCCCTTCTTCCAAATCCTGACATTTGGATTCTAGATGAGCCGTTA
ACTGGTTTAGACCCTCAAGCTTCTTTTGATTTGAAAGAAATGATGAAAGAACATGCTAAAAATGGAAAAACAGTTATTTT
TTCAACACATGTCTTAGCAGTTGCAGAACAGTTATGCGACAGAATAGGTATTTTGAAACAAGGGAAATTAATCTTTGTCG
GTAGCTTAGGTGAGTTAAAAATGAAATATCCAGATAAAGATTTGGAAACTATCTATTTGGAATTAGCAGGACGTCAAGCT
AGTAGGGAGGGATAA

Domains


Predicted by InterProScan.

(17-160)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q8E1S3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

38.683

99.59

0.385

  pptA Streptococcus salivarius strain HSISS4

38.272

99.59

0.381