Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   PUW70_RS04920 Genome accession   NZ_CP118029
Coordinates   967162..968232 (-) Length   356 a.a.
NCBI ID   WP_070811350.1    Uniprot ID   -
Organism   Streptococcus anginosus strain VSI68     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 962162..973232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUW70_RS04900 (PUW70_04900) - 962175..963218 (+) 1044 WP_101750393.1 dihydrolipoamide acetyltransferase -
  PUW70_RS04905 (PUW70_04905) lpdA 963250..964953 (+) 1704 WP_024051538.1 dihydrolipoyl dehydrogenase -
  PUW70_RS04910 (PUW70_04910) - 964962..965951 (+) 990 WP_274996378.1 lipoate--protein ligase -
  PUW70_RS04915 (PUW70_04915) ucpA 966303..967100 (+) 798 WP_070584663.1 SDR family oxidoreductase UcpA -
  PUW70_RS04920 (PUW70_04920) xerS 967162..968232 (-) 1071 WP_070811350.1 tyrosine recombinase XerS Machinery gene
  PUW70_RS04925 (PUW70_04925) - 968473..968772 (-) 300 WP_224783692.1 hypothetical protein -
  PUW70_RS04930 (PUW70_04930) ffh 968848..970398 (-) 1551 WP_024051544.1 signal recognition particle protein -
  PUW70_RS04935 (PUW70_04935) - 970459..970791 (-) 333 WP_003024506.1 putative DNA-binding protein -
  PUW70_RS04940 (PUW70_04940) - 970907..971605 (-) 699 WP_003024508.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41389.42 Da        Isoelectric Point: 9.1829

>NTDB_id=720380 PUW70_RS04920 WP_070811350.1 967162..968232(-) (xerS) [Streptococcus anginosus strain VSI68]
MKREILLERIEKLKAIMPWYVLEYYQSKLTVPYSFTTLYEYLKEYDRFFHWILDSGIDDGPQIAEIPLSVLENMTKKDME
AFILYLRERPLLNVNTTQNGVSQTTINRTLSALSSLYKYLTEEVENENGEPYFYRNVMKKVSTKKKRETLAARAENIKQK
LFLGEETEQFLNYIDEEYPKNLSNRALSSFDKNKERDLAIIALLLASGVRLSEAVNLDLKDLNLKMMVIEVTRKGGKRDS
VNVAAFAKAYLERYLEVRSKRYKAEKSDTALFLTEYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=720380 PUW70_RS04920 WP_070811350.1 967162..968232(-) (xerS) [Streptococcus anginosus strain VSI68]
ATGAAACGCGAAATATTGTTAGAAAGAATTGAAAAACTAAAGGCCATCATGCCTTGGTACGTTTTGGAATACTATCAGTC
TAAATTGACTGTTCCATACAGTTTTACAACCTTATATGAATATCTCAAAGAATATGATCGCTTTTTTCATTGGATTTTAG
ACTCTGGAATTGATGATGGGCCGCAGATTGCAGAAATTCCTCTGTCAGTATTGGAAAATATGACTAAAAAAGATATGGAA
GCGTTTATTCTTTACTTACGGGAGCGTCCATTGCTTAATGTTAATACTACACAGAACGGAGTATCGCAAACCACCATTAA
TCGCACTCTTTCTGCTCTCTCTAGCCTTTATAAATATTTAACTGAAGAGGTGGAAAATGAGAATGGGGAACCTTATTTCT
ATCGTAATGTCATGAAAAAAGTGTCTACTAAGAAAAAGAGAGAGACTTTAGCCGCGCGCGCTGAAAACATCAAACAAAAA
CTCTTTTTGGGCGAAGAAACTGAACAATTTTTGAATTATATTGATGAAGAATACCCTAAAAATTTATCAAATCGGGCTCT
CTCCTCTTTTGACAAAAATAAAGAGCGAGATTTGGCAATCATAGCACTGCTTCTTGCATCTGGTGTTCGTCTATCCGAGG
CAGTAAATCTTGATTTGAAAGACCTAAATCTTAAAATGATGGTCATTGAAGTTACTCGTAAGGGCGGGAAAAGAGATTCT
GTCAATGTTGCAGCTTTTGCCAAAGCTTATTTGGAAAGGTATCTGGAGGTTCGCTCTAAACGTTACAAAGCGGAAAAATC
AGACACTGCCCTCTTTTTGACAGAATATAGAGGTGTTCCTAACCGGATTGATGCTTCTAGTGTAGAAAAGATGGTTGCTA
AGTATTCTGAAGATTTCAAAGTTCGAGTGACACCTCACAAACTCCGCCATACGCTGGCTACTCGACTTTATGATGCTACT
AAATCTCAAGTTTTGGTCAGTCATCAGCTAGGACATTCCAGCACTCAAGTTACAGACCTCTACACCCATATTGTTAATGA
CGAACAAAAAAATGCATTGGATAACTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(188-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

87.921

100

0.879