Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   NW961_RS07600 Genome accession   NZ_CP102955
Coordinates   1587493..1587939 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 28-G-I     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1582493..1592939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW961_RS07570 (NW961_07570) gcvPA 1583419..1584765 (-) 1347 WP_070973961.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  NW961_RS07575 (NW961_07575) gcvT 1584785..1585876 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  NW961_RS07580 (NW961_07580) - 1586035..1586559 (-) 525 WP_001015121.1 shikimate kinase -
  NW961_RS07585 (NW961_07585) - 1586549..1586695 (-) 147 WP_001789879.1 hypothetical protein -
  NW961_RS07590 (NW961_07590) comGF 1586792..1587289 (-) 498 WP_258415588.1 competence type IV pilus minor pilin ComGF Machinery gene
  NW961_RS07595 (NW961_07595) comGE 1587207..1587506 (-) 300 WP_258415589.1 competence protein ComGE Machinery gene
  NW961_RS07600 (NW961_07600) comGD 1587493..1587939 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  NW961_RS07605 (NW961_07605) comGC 1587917..1588228 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  NW961_RS07610 (NW961_07610) comGB 1588242..1589312 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  NW961_RS07615 (NW961_07615) comGA 1589284..1590258 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  NW961_RS07620 (NW961_07620) - 1590310..1590933 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  NW961_RS07625 (NW961_07625) - 1590930..1591259 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  NW961_RS07630 (NW961_07630) - 1591259..1592245 (-) 987 WP_000161314.1 ROK family glucokinase -
  NW961_RS07635 (NW961_07635) - 1592242..1592445 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=720335 NW961_RS07600 WP_001788899.1 1587493..1587939(-) (comGD) [Staphylococcus aureus strain 28-G-I]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=720335 NW961_RS07600 WP_001788899.1 1587493..1587939(-) (comGD) [Staphylococcus aureus strain 28-G-I]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1