Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PT280_RS20745 Genome accession   NZ_CP118014
Coordinates   4231054..4231659 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain B-766     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4226054..4236659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT280_RS20725 aes 4226091..4227050 (+) 960 WP_000801846.1 acetyl esterase -
  PT280_RS20730 hemH 4227047..4228009 (-) 963 WP_001250096.1 ferrochelatase -
  PT280_RS20735 adk 4228245..4228889 (-) 645 WP_001220233.1 adenylate kinase -
  PT280_RS20740 htpG 4229070..4230944 (-) 1875 WP_000678194.1 molecular chaperone HtpG -
  PT280_RS20745 recR 4231054..4231659 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PT280_RS20750 ybaB 4231659..4231988 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PT280_RS20755 dnaX 4232041..4233972 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  PT280_RS20760 apt 4234101..4234652 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PT280_RS20765 ybaN 4234805..4235182 (-) 378 WP_001188905.1 DUF454 family protein -
  PT280_RS20770 priC 4235252..4235779 (+) 528 WP_000844849.1 primosomal replication protein N'' -
  PT280_RS20775 rsmS 4235793..4235954 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  PT280_RS20780 - 4236007..4236105 (-) 99 Protein_4035 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=720305 PT280_RS20745 WP_001195025.1 4231054..4231659(-) (recR) [Escherichia coli strain B-766]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=720305 PT280_RS20745 WP_001195025.1 4231054..4231659(-) (recR) [Escherichia coli strain B-766]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443