Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   PUN50_RS12570 Genome accession   NZ_CP117988
Coordinates   2735778..2739158 (-) Length   1126 a.a.
NCBI ID   WP_274291254.1    Uniprot ID   -
Organism   Vibrio campbellii strain 20220413_1     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2730778..2744158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN50_RS12545 (PUN50_12545) - 2731082..2731510 (+) 429 WP_005382194.1 HIT family protein -
  PUN50_RS12550 (PUN50_12550) - 2731661..2732182 (+) 522 WP_005426711.1 YqhA family protein -
  PUN50_RS12555 (PUN50_12555) - 2732292..2732522 (-) 231 WP_005426709.1 FeoC-like transcriptional regulator -
  PUN50_RS12560 (PUN50_12560) feoB 2732519..2734795 (-) 2277 WP_274290482.1 Fe(2+) transporter permease subunit FeoB -
  PUN50_RS12565 (PUN50_12565) - 2734795..2735022 (-) 228 WP_005426705.1 FeoA family protein -
  PUN50_RS12570 (PUN50_12570) tfoS 2735778..2739158 (-) 3381 WP_274291254.1 AraC family transcriptional regulator Regulator
  PUN50_RS12575 (PUN50_12575) znuA 2739371..2740252 (-) 882 WP_077261792.1 zinc ABC transporter substrate-binding protein ZnuA -
  PUN50_RS12580 (PUN50_12580) znuC 2740331..2741119 (+) 789 WP_038892101.1 zinc ABC transporter ATP-binding protein ZnuC -
  PUN50_RS12585 (PUN50_12585) znuB 2741112..2741897 (+) 786 WP_045377675.1 zinc ABC transporter permease subunit ZnuB -
  PUN50_RS12590 (PUN50_12590) sucD 2742025..2742897 (-) 873 WP_005436989.1 succinate--CoA ligase subunit alpha -
  PUN50_RS12595 (PUN50_12595) sucC 2742897..2744063 (-) 1167 WP_005426700.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 1126 a.a.        Molecular weight: 126946.30 Da        Isoelectric Point: 6.0319

>NTDB_id=720215 PUN50_RS12570 WP_274291254.1 2735778..2739158(-) (tfoS) [Vibrio campbellii strain 20220413_1]
MLRQIALFFGAFILSFQAIASSEANAIFYPLPNQVKGTFIAAKKLFPGEQGGLWIHDVHGRVLFYDGQTTLPKSGSFLRN
KVEQLAYHKGSFWTFIENEVYQTYPNQERRLVFSLNPGSQIRKIGSSGNYIWVSDGAQFYTYNVETSELNSFSLLQLYQH
SNNSYVYINDAIFVETKWALATTSGVYLSEGSKFNHVVSSGKNYIEKVYYSHTRREILVGTLKGALIFNIYEPGKPVIRI
GASHVLTFAETNQEYWVGTEQGLYLYSFLTGEVTQVTPASFLELELASTKIYSLLNDNMGGMWIATNQGIRYYSLFSKKF
ERITFSSYDQQMLSGRIRQTLTGPDGALWFADDHTLYRSNNGSITDVLNVSSQINEFAFQGERLWVATSTGLEIYSLKNL
QQMTFPYLRVIAGKTIDHITADGPNRLWVSSGYQLFNIDAVNQTMRNFGSEWLVSKFLPAKITRLYDKEELLLIGTDHGV
YEYDGERIRFNHFSEKYGESLDIITANDGSQWFASAYGVFRTVPGSNEKQVMEMSVANSRPACLLSDSEGVWLASSVGLS
YYHLSGQLMKHYSSSSGLINNEFLPGICNVIRRAEDSDRQLIFGSQYGLVKADSSKLLVSNTPESKLIVSQVMLENEVVQ
VGSADLEEMKLPYGSSLSFLFGVMPKPDNQNLYYRLNESEKWQTLEGGQLTLEHLNSGDYHLQVSNDLQLASGLIGLDSR
FTVLKPWYLSKLAISGFTLAVIAVLALLMYWRSRYVLQANRDLAAQVTLKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
HVAQSIKSSIDSIANKLPIDVDSATQDHLSKTYWQLNELKSAPEDTSSGSQNYNLSQITQSVVDVWREDFSKAGINVELQ
DEQKASRISLESFNLDVIFNSIFANIIKRSFRGQLVKLTLEEGNDIVSLSFIDHGTQLPSKASTIRPTSTNNVDLSMDNL
PQLVAASGGHLSMFTSDAQNKIEISWPCAQEPSHVEEALPEFAQTQQPQQEEMSPEQEWLMKVYQLVAEHYHDPEFGTAS
AAKMLFMSERSLQRRFKSASSRTLKDYVTEVRLETACEQLLAGEKISEVAFNCGFNDPSYFSQKFKLHFGLPPSKFAMTQ
ESQTSL

Nucleotide


Download         Length: 3381 bp        

>NTDB_id=720215 PUN50_RS12570 WP_274291254.1 2735778..2739158(-) (tfoS) [Vibrio campbellii strain 20220413_1]
TTGCTGCGCCAAATAGCCCTATTTTTTGGGGCTTTTATCCTCTCATTTCAAGCAATTGCTTCAAGTGAAGCGAATGCGAT
CTTTTACCCTTTGCCGAATCAGGTTAAGGGCACTTTCATTGCAGCGAAAAAATTGTTCCCCGGTGAACAAGGTGGGCTCT
GGATCCATGATGTTCATGGTCGTGTTCTGTTCTACGATGGTCAAACCACACTGCCAAAATCCGGTAGCTTCCTCAGAAAC
AAAGTAGAGCAGTTGGCTTACCACAAAGGTTCATTTTGGACATTTATTGAAAACGAGGTGTATCAAACTTATCCGAACCA
AGAGCGCCGTTTAGTCTTTAGCCTCAACCCTGGCTCTCAGATCCGTAAGATTGGCTCATCTGGGAACTATATTTGGGTCA
GTGATGGTGCGCAGTTCTATACCTATAATGTTGAAACCAGCGAACTGAACTCCTTTTCTCTATTACAGCTCTATCAGCAT
AGCAACAACAGTTACGTCTATATTAATGACGCTATCTTTGTCGAAACCAAGTGGGCATTGGCGACAACTTCAGGCGTATA
CCTATCAGAAGGCAGCAAGTTTAATCATGTTGTCTCATCGGGCAAAAATTACATTGAGAAAGTGTATTACTCCCATACTC
GTCGTGAAATCTTAGTCGGTACTTTAAAAGGCGCGTTGATATTTAATATCTATGAGCCCGGCAAGCCTGTTATTCGAATT
GGCGCTTCTCATGTCTTAACCTTTGCTGAAACCAATCAAGAATACTGGGTAGGGACAGAGCAAGGTCTTTATTTGTATTC
CTTCTTAACTGGCGAAGTAACCCAAGTGACACCAGCAAGTTTTCTAGAACTAGAGCTCGCTAGCACCAAAATTTACTCGT
TGCTGAACGATAATATGGGGGGAATGTGGATTGCCACCAACCAAGGCATTCGCTATTACTCTCTGTTTAGTAAAAAGTTT
GAGCGAATCACGTTCAGCAGTTATGACCAGCAAATGCTCTCTGGTCGTATTCGGCAGACGCTTACCGGACCCGATGGTGC
ACTTTGGTTTGCGGACGATCATACGTTGTATCGCTCGAACAATGGCAGCATTACCGATGTGTTGAATGTGTCGTCACAAA
TTAACGAATTTGCTTTTCAGGGAGAGAGGCTCTGGGTTGCCACGTCCACGGGTTTGGAAATATATAGCCTGAAAAACTTA
CAGCAGATGACATTCCCTTACCTGCGAGTCATCGCAGGCAAGACAATCGACCATATTACCGCTGATGGCCCCAATCGCCT
TTGGGTATCCAGTGGTTATCAGCTATTTAATATTGATGCTGTTAACCAGACTATGAGAAATTTTGGCAGTGAATGGTTAG
TGAGTAAGTTCTTACCTGCGAAGATTACGCGTCTGTACGACAAGGAAGAGTTGCTGCTGATAGGGACTGACCATGGCGTT
TACGAGTATGACGGAGAGCGAATTCGCTTTAACCATTTTTCAGAAAAGTACGGTGAATCACTCGATATTATTACCGCAAA
TGATGGCTCGCAGTGGTTTGCTTCCGCCTATGGCGTTTTCAGAACCGTTCCGGGCAGCAATGAAAAACAAGTGATGGAGA
TGAGTGTCGCAAACTCTCGCCCAGCTTGTTTGCTTAGTGATTCAGAAGGGGTGTGGCTTGCTTCTTCTGTTGGCTTAAGT
TACTACCATTTATCTGGACAGCTCATGAAGCATTACTCTTCTTCATCGGGCCTTATCAATAATGAATTCTTACCAGGCAT
TTGTAACGTTATCCGTCGTGCTGAAGATAGTGATCGCCAACTTATCTTTGGCTCTCAGTATGGGTTAGTTAAAGCTGACT
CGTCTAAATTGCTGGTTTCTAACACGCCAGAATCTAAGCTTATTGTTAGCCAAGTCATGCTGGAAAATGAAGTGGTACAA
GTGGGTAGTGCCGACTTAGAAGAGATGAAGCTGCCTTATGGGTCGTCCCTTAGTTTCCTTTTTGGTGTGATGCCCAAGCC
TGACAATCAGAATTTGTATTATCGCTTAAATGAAAGTGAAAAATGGCAAACGTTAGAAGGTGGGCAATTAACGTTAGAAC
ACCTGAATTCTGGCGATTACCACTTACAGGTTAGTAATGACTTACAACTGGCTTCGGGTCTGATTGGATTAGATTCCAGA
TTTACAGTGCTTAAACCATGGTATCTATCGAAGTTGGCCATATCGGGTTTTACCTTGGCTGTTATTGCGGTTCTTGCCCT
TCTAATGTACTGGCGCTCACGCTATGTGCTGCAAGCTAACCGAGATCTGGCAGCTCAAGTTACGTTAAAAACCAACCAGC
TGCGCCATCAAAGTCGAGTGTTGTTGACCAGTAACCAACAATTGAGAAAGCAGATTCAGGTAAGAAACCTGCTTGTGGAT
CATGTTGCTCAATCGATAAAGTCGAGTATTGATTCGATCGCGAACAAGCTTCCTATTGATGTGGATTCGGCAACTCAAGA
CCATTTATCCAAGACCTACTGGCAATTGAACGAGCTTAAAAGTGCTCCTGAAGACACCAGCAGCGGCAGTCAAAATTACA
ACTTAAGTCAGATAACCCAATCGGTGGTGGATGTTTGGCGCGAGGACTTTTCAAAAGCAGGCATTAATGTCGAACTGCAA
GATGAGCAAAAGGCGAGCCGCATTTCATTAGAGAGCTTTAACCTCGATGTCATCTTTAACAGCATCTTTGCCAACATCAT
CAAGCGCTCGTTCCGGGGACAGTTGGTTAAATTAACACTGGAAGAGGGCAATGATATTGTCTCGCTGAGCTTCATTGACC
ATGGTACTCAGTTGCCAAGTAAAGCATCGACAATACGCCCAACGAGCACCAACAATGTTGACTTAAGTATGGATAACCTG
CCTCAATTAGTTGCAGCCAGTGGCGGCCATTTATCGATGTTCACTTCTGATGCTCAAAATAAAATAGAGATTTCGTGGCC
ATGTGCTCAAGAACCAAGCCATGTTGAGGAGGCGCTTCCTGAGTTTGCTCAGACACAGCAACCTCAACAAGAAGAGATGT
CGCCTGAGCAAGAGTGGTTAATGAAAGTGTATCAGTTAGTGGCTGAGCACTACCACGACCCAGAGTTTGGTACGGCATCT
GCCGCTAAGATGTTGTTTATGTCTGAGCGAAGCTTGCAGAGACGATTTAAGTCGGCGTCGTCCAGAACACTAAAAGATTA
TGTAACGGAAGTCAGGTTGGAGACCGCATGTGAGCAGTTGCTAGCTGGTGAGAAGATCAGTGAAGTTGCCTTCAACTGTG
GCTTCAATGACCCATCCTACTTTAGCCAGAAGTTTAAATTACACTTTGGGTTACCGCCGTCTAAGTTCGCGATGACACAA
GAGAGCCAAACAAGCCTATAG

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1042-1116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

39.397

100

0.394