Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PUN50_RS09920 Genome accession   NZ_CP117988
Coordinates   2122854..2123798 (+) Length   314 a.a.
NCBI ID   WP_274290288.1    Uniprot ID   -
Organism   Vibrio campbellii strain 20220413_1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2117854..2128798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN50_RS09905 (PUN50_09905) - 2118415..2119293 (+) 879 WP_274290285.1 AEC family transporter -
  PUN50_RS09910 (PUN50_09910) - 2119385..2120128 (+) 744 WP_274290286.1 metallophosphoesterase family protein -
  PUN50_RS09915 (PUN50_09915) - 2120308..2122443 (-) 2136 WP_274290287.1 condensation domain-containing protein -
  PUN50_RS09920 (PUN50_09920) ceuB 2122854..2123798 (+) 945 WP_274290288.1 ABC transporter permease Machinery gene
  PUN50_RS09925 (PUN50_09925) - 2123795..2124748 (+) 954 WP_274290289.1 iron chelate uptake ABC transporter family permease subunit -
  PUN50_RS09930 (PUN50_09930) - 2124804..2125787 (+) 984 WP_274290290.1 siderophore ABC transporter substrate-binding protein -
  PUN50_RS09935 (PUN50_09935) - 2125926..2128118 (+) 2193 WP_274290291.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 33723.50 Da        Isoelectric Point: 8.4615

>NTDB_id=720198 PUN50_RS09920 WP_274290288.1 2122854..2123798(+) (ceuB) [Vibrio campbellii strain 20220413_1]
MNAKIIFVFFLLCIVSIFIGANPIDWSLLLKMDENAWLPITASRLPRLVALILTGAGLAMCGVILQHIVRNRFVEPGTTG
GLDAAKLGILVSIVMLPNSDKLERMIFAVVFCFAAGLIYIAIVRKIKFSNSALVSVIGLMFGSVLSAIAEFYAYQNNVLQ
SMSGWLMGDFSKVVQEHYEIIYLILPTTLLTYFYANKFTVMGMGEDAASNLGINFATTAALGLMLVSVTVAVTVVTVGAI
HFVGLVIPNLVALKYGDHLKNTLPIVALGGASLLIFCDVISRLVVFPFEVPIGLTASAIGGTLFLVLLLKGARA

Nucleotide


Download         Length: 945 bp        

>NTDB_id=720198 PUN50_RS09920 WP_274290288.1 2122854..2123798(+) (ceuB) [Vibrio campbellii strain 20220413_1]
ATGAACGCTAAAATTATCTTTGTTTTCTTTTTATTGTGTATCGTTTCCATTTTTATTGGCGCCAATCCAATCGATTGGTC
ACTACTGCTGAAGATGGACGAAAATGCTTGGTTGCCGATTACTGCTAGCAGACTTCCGAGGTTGGTTGCGTTGATTCTAA
CAGGGGCCGGCTTGGCGATGTGCGGCGTCATCTTGCAACACATCGTCAGAAATCGTTTTGTAGAGCCTGGGACTACCGGC
GGCCTAGATGCTGCCAAGCTTGGTATTTTGGTATCGATCGTCATGTTGCCAAATTCAGATAAGCTTGAGCGCATGATTTT
TGCTGTCGTATTTTGCTTTGCAGCAGGGCTCATTTACATCGCGATCGTACGAAAAATTAAATTCAGTAATTCAGCATTGG
TCTCAGTCATTGGACTGATGTTTGGCAGCGTATTGAGCGCAATCGCTGAATTTTACGCTTATCAAAATAACGTTCTTCAA
AGCATGTCTGGCTGGTTAATGGGAGACTTTTCTAAGGTCGTACAGGAACACTACGAGATCATTTACCTGATCTTACCCAC
CACTCTGTTGACCTACTTCTACGCAAATAAATTTACCGTCATGGGCATGGGAGAAGATGCAGCTTCTAACTTGGGCATTA
ACTTCGCAACAACGGCAGCGTTAGGTCTGATGCTGGTTTCCGTGACCGTTGCTGTGACCGTCGTGACCGTCGGGGCAATT
CATTTTGTCGGTTTAGTGATCCCAAACCTTGTCGCACTAAAATATGGCGACCACCTGAAAAACACACTGCCAATCGTGGC
ATTGGGTGGCGCATCACTGCTTATTTTTTGCGATGTGATAAGCAGACTTGTGGTCTTTCCTTTTGAGGTTCCGATCGGCC
TTACCGCGAGTGCGATTGGTGGCACCCTATTTCTTGTATTGCTCCTTAAAGGGGCACGTGCATGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

45.455

94.586

0.43