Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   JMH49_RS10520 Genome accession   NZ_AP024270
Coordinates   1950411..1951220 (-) Length   269 a.a.
NCBI ID   WP_011173975.1    Uniprot ID   Q72H91
Organism   Thermus thermophilus strain HB5018     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1945411..1956220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMH49_RS10490 (TthHB5018_20800) rsmI 1945574..1946368 (-) 795 WP_201351018.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  JMH49_RS10495 (TthHB5018_20810) - 1946370..1946864 (-) 495 WP_011173970.1 hypothetical protein -
  JMH49_RS10500 (TthHB5018_20820) - 1946928..1947455 (-) 528 WP_011173971.1 inorganic diphosphatase -
  JMH49_RS14250 - 1947488..1948112 (+) 625 Protein_2056 YcxB family protein -
  JMH49_RS10510 (TthHB5018_20850) comEA 1948085..1948393 (+) 309 WP_024119555.1 helix-hairpin-helix domain-containing protein Machinery gene
  JMH49_RS10515 (TthHB5018_20860) comA/comEC 1948390..1950423 (+) 2034 WP_201351019.1 ComEC/Rec2 family competence protein Machinery gene
  JMH49_RS10520 (TthHB5018_20870) spo0J 1950411..1951220 (-) 810 WP_011173975.1 ParB/RepB/Spo0J family partition protein Regulator
  JMH49_RS10525 (TthHB5018_20880) soj 1951204..1951953 (-) 750 WP_201351020.1 chromosome-partitioning ATPase Soj -
  JMH49_RS10530 (TthHB5018_20890) rsmG 1951947..1952696 (-) 750 WP_024119551.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  JMH49_RS10535 (TthHB5018_20900) mnmG 1952696..1954489 (-) 1794 WP_201351021.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29750.61 Da        Isoelectric Point: 10.1293

>NTDB_id=72016 JMH49_RS10520 WP_011173975.1 1950411..1951220(-) (spo0J) [Thermus thermophilus strain HB5018]
MSRKPSGLGRGLEALLPKTGAGVVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQGDGYELVAGERR
YRAALMAGLQEVPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRLLQL
PPEALEALERGEITAGHARALLMLEPEDRLWGLKEILEKGLSVRQAEALRERLAMAPKRSAEPSPLSLELSRHLGLPVRV
VGGKKGKVVIQYRSLEELEALLRRLGYQA

Nucleotide


Download         Length: 810 bp        

>NTDB_id=72016 JMH49_RS10520 WP_011173975.1 1950411..1951220(-) (spo0J) [Thermus thermophilus strain HB5018]
GTGTCCAGGAAGCCTAGCGGTCTCGGGCGGGGCCTCGAGGCCCTGCTCCCCAAGACGGGGGCGGGGGTGGTCCGCCTGCC
CCTCGCCAGCATCCGCCCCAACCCCCGCCAGCCGCGGAAGCGGTTCGCCGAGGAGAGCCTCAAGGAGCTTGCCGACTCCA
TCCGGGAGAAGGGCCTCCTCCAACCCCTCCTCGTCCGGCCCCAGGGGGACGGGTACGAGCTCGTGGCGGGGGAAAGGCGC
TACCGGGCCGCCCTCATGGCGGGGCTTCAGGAGGTCCCCGCCGTGGTCAAGGACCTCACGGACCGGGAGGCCTTGGAGCT
CGCCCTGGTGGAGAACCTCCAGCGGGAGGACCTCTCCCCTGTGGAGGAGGCCCGGGGCTACCAGGCCCTTTTGGAGATGG
GCCTCACCCAGGAGGAGGTGGCCCGGCGGGTGGGCAAGGCCCGCTCCACCGTGGCCAACGCCCTCAGGCTCCTCCAGCTT
CCCCCCGAGGCCCTCGAGGCCCTGGAGCGGGGGGAGATCACCGCGGGCCACGCCCGGGCCCTCCTCATGCTGGAGCCCGA
GGACCGGCTCTGGGGGCTTAAGGAGATCCTGGAGAAGGGGCTTTCCGTGCGGCAGGCGGAGGCCCTGAGGGAGCGCCTGG
CCATGGCCCCTAAGCGCTCCGCTGAGCCCTCCCCCCTCTCCCTGGAGCTCTCCCGCCACCTGGGCCTGCCCGTGAGGGTG
GTGGGGGGGAAGAAGGGCAAGGTGGTGATCCAGTACCGCTCCTTGGAGGAGCTGGAGGCCCTTCTGCGGCGCCTCGGCTA
CCAGGCGTAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(162-210)

ParB/Sulfiredoxin domain (ParB_N)

(26-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1VZ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

42.4

92.937

0.394

Multiple sequence alignment