Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   PUN50_RS00255 Genome accession   NZ_CP117988
Coordinates   55547..57382 (+) Length   611 a.a.
NCBI ID   WP_274290705.1    Uniprot ID   -
Organism   Vibrio campbellii strain 20220413_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 50547..62382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN50_RS00240 (PUN50_00240) - 50903..52663 (-) 1761 WP_240304895.1 DUF1501 domain-containing protein -
  PUN50_RS00245 (PUN50_00245) - 52667..54169 (-) 1503 WP_274290704.1 DUF1800 domain-containing protein -
  PUN50_RS00250 (PUN50_00250) rarD 54456..55370 (-) 915 WP_005430308.1 EamA family transporter RarD -
  PUN50_RS00255 (PUN50_00255) recQ 55547..57382 (+) 1836 WP_274290705.1 ATP-dependent DNA helicase RecQ Machinery gene
  PUN50_RS00260 (PUN50_00260) - 57392..57697 (+) 306 WP_005378772.1 DUF3630 family protein -
  PUN50_RS00265 (PUN50_00265) - 57932..58606 (+) 675 WP_005378770.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -
  PUN50_RS00270 (PUN50_00270) gppA 58811..60304 (-) 1494 WP_077200110.1 guanosine-5'-triphosphate,3'-diphosphate diphosphatase -
  PUN50_RS00275 (PUN50_00275) rhlB 60324..61637 (-) 1314 WP_005430306.1 ATP-dependent RNA helicase RhlB -
  PUN50_RS00280 (PUN50_00280) trxA 61749..62075 (+) 327 WP_004745500.1 thioredoxin TrxA -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 69172.07 Da        Isoelectric Point: 6.6824

>NTDB_id=720150 PUN50_RS00255 WP_274290705.1 55547..57382(+) (recQ) [Vibrio campbellii strain 20220413_1]
MTSTLLAEQSDSPLTPQRVLEDVFGYQEFRDGQQLVIDAAVEGRDSLVILPTGGGKSLCYQIPALVRSGITLVISPLISL
MKDQVDQLKANGVAAECINSTMPRDELLSVYNRMHTGHLKLVYVSPERVLMRDFIERLENLPLSMIAVDEAHCISQWGHD
FRPEYAALGQLKQQFSHVPFMALTATADDATRRDILERLQLNNPEVYLGSFDRPNIRYNLVEKHKPVSQIVRYLETQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVETHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPC
GNCDICLDPPKHFDATEEARKALSCVYRVNQSFGMGYVVEVLRGMQNIRVRENGHDKISTYAIGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDVTLELAVPRLDTAARAAKSDKLTSKNYDKKLFAKLRKLRKSIADEDGLPPYV
VFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFLDLIQEHITHHG

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=720150 PUN50_RS00255 WP_274290705.1 55547..57382(+) (recQ) [Vibrio campbellii strain 20220413_1]
ATGACCTCGACTTTGCTAGCCGAACAATCTGATTCGCCTTTGACGCCTCAACGTGTGTTGGAGGATGTGTTTGGTTACCA
AGAATTCCGAGATGGGCAGCAACTGGTGATTGACGCCGCGGTAGAAGGTCGCGACAGCTTAGTTATCCTGCCTACGGGTG
GCGGTAAGTCGCTGTGTTATCAAATTCCTGCTTTGGTTCGCTCTGGCATTACTTTGGTTATTTCTCCGCTTATCTCGCTG
ATGAAGGACCAAGTCGATCAGCTTAAAGCCAACGGCGTGGCGGCTGAGTGCATCAACTCGACCATGCCTCGTGATGAGCT
GCTCAGCGTGTATAACCGCATGCACACTGGTCATCTTAAGTTGGTGTACGTCTCGCCAGAACGCGTATTAATGCGTGATT
TCATTGAGCGCTTGGAAAACTTGCCGCTATCGATGATTGCCGTCGATGAAGCGCACTGTATTTCCCAATGGGGACACGAC
TTCCGTCCAGAATACGCCGCGCTTGGTCAACTCAAGCAGCAGTTTTCGCATGTGCCATTTATGGCGCTGACGGCGACGGC
GGATGACGCAACGCGCCGAGATATTCTTGAGCGTCTGCAACTGAATAATCCAGAGGTTTATCTAGGCAGCTTCGACCGTC
CTAACATTCGCTACAACTTAGTTGAGAAGCACAAGCCAGTTTCGCAAATCGTTCGTTATCTTGAAACCCAAAAGGGTAAT
TGCGGCATCATCTATTGTGGTAGCCGTAAGAAAGTTGAGATGGTGACTGAGAAGCTGTGTAACAACCACATTCGTGCTGC
TGGTTATCACGCAGGTATGGATGCCGATGAGCGCGCTTACGTTCAAGAAGCTTTCCAACGTGATGATATCCAAATCGTAG
TGGCGACTGTGGCATTCGGTATGGGCATCAACAAACCAAACGTGCGCTTTGTGGTTCACTTTGATATCCCGCGTAATATC
GAGTCCTACTATCAGGAAACCGGTCGTGCAGGGCGTGATGGTTTGCCTGCGGAAGCGATGATGTTGTATGACCCAGCGGA
CATCAGTTGGCTGCGTCGTATGTTGGATGAGAAAGACGATGGTCCACAGAAGCAGGTGGAAACCCACAAACTGAATGCGA
TGAGTGCCTTTGCTGAGGCGCAAACTTGTCGTCGTCAGGTGCTATTGAATTACTTTGGTGAGTATCGTGAGAAGCCATGT
GGCAACTGCGATATTTGCTTAGATCCACCGAAACACTTTGATGCCACGGAGGAAGCGCGTAAGGCGTTGTCTTGTGTGTA
TCGTGTTAATCAGAGCTTTGGTATGGGCTACGTGGTAGAAGTGCTACGTGGCATGCAAAACATTCGTGTACGTGAAAACG
GGCACGATAAGATTTCTACCTACGCGATAGGGCGCGATCACAGCCACGATTACTGGGTGAGTATCTTCCGTCAGTTAATC
CACAAAGGGCTGCTGTTCCAAAACATCACGCGTAACTCAACGCTGCAACTTACTGAAGAGGCGCGTCCGCTGCTACGTGG
CGATGTGACTCTAGAGTTAGCGGTACCACGTTTAGACACCGCAGCACGTGCGGCGAAGTCAGATAAACTGACCAGCAAGA
ACTACGACAAAAAGCTGTTTGCTAAGTTACGTAAGCTGCGTAAGTCGATCGCTGATGAAGATGGTTTGCCACCATACGTA
GTCTTTAGTGACGCGACTCTTATTGATATGGCGGAAATTCTGCCAACGTCTTACGGCGAAATGCTGGCAGTCAGCGGCGT
TGGTCAGCGCAAACTGGAGAAGTACGCCGATCCATTCCTCGATTTGATTCAAGAACACATTACTCACCACGGATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(229-333)

HRDC domain (HRDC)

(537-603)

RecQ zinc-binding (RecQ_Zn_bind)

(346-407)

RQC domain (RQC)

(409-517)

DEAD/DEAH box helicase (DEAD)

(31-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

40.203

96.89

0.39