Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PT746_RS31810 Genome accession   NZ_CP117974
Coordinates   6731605..6732162 (-) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   G3XD84
Organism   Pseudomonas aeruginosa strain B-3509     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6726605..6737162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT746_RS31795 pilY1 6726697..6730188 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  PT746_RS31800 pilX 6730200..6730787 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PT746_RS31805 pilW 6730784..6731608 (-) 825 WP_004352757.1 type 4a pilus minor pilin PilW -
  PT746_RS31810 pilV 6731605..6732162 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  PT746_RS31815 - 6732153..6732659 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  PT746_RS31820 - 6732765..6733274 (-) 510 WP_003161431.1 Tfp pilus assembly protein FimT/FimU -
  PT746_RS31825 thiO 6733409..6734503 (+) 1095 WP_003119424.1 glycine oxidase ThiO -
  PT746_RS31830 pilR 6734549..6735886 (-) 1338 WP_003094694.1 two-component system response regulator PilR -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=720057 PT746_RS31810 WP_003119423.1 6731605..6732162(-) (pilV) [Pseudomonas aeruginosa strain B-3509]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=720057 PT746_RS31810 WP_003119423.1 6731605..6732162(-) (pilV) [Pseudomonas aeruginosa strain B-3509]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G3XD84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995