Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PT723_RS19310 Genome accession   NZ_CP117971
Coordinates   3908409..3909014 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain B-1109     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3903409..3914014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT723_RS19290 aes 3903446..3904405 (+) 960 WP_000801812.1 acetyl esterase -
  PT723_RS19295 hemH 3904402..3905364 (-) 963 WP_001250103.1 ferrochelatase -
  PT723_RS19300 adk 3905600..3906244 (-) 645 WP_001220233.1 adenylate kinase -
  PT723_RS19305 htpG 3906425..3908299 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  PT723_RS19310 recR 3908409..3909014 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PT723_RS19315 ybaB 3909014..3909343 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PT723_RS19320 dnaX 3909396..3911327 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  PT723_RS19325 apt 3911456..3912007 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PT723_RS19330 ybaN 3912160..3912537 (-) 378 WP_001188905.1 DUF454 family protein -
  PT723_RS19335 priC 3912607..3913134 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  PT723_RS19340 rsmS 3913148..3913309 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=719946 PT723_RS19310 WP_001195025.1 3908409..3909014(-) (recR) [Escherichia coli strain B-1109]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=719946 PT723_RS19310 WP_001195025.1 3908409..3909014(-) (recR) [Escherichia coli strain B-1109]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443