Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   PT723_RS00360 Genome accession   NZ_CP117971
Coordinates   80157..81182 (+) Length   341 a.a.
NCBI ID   WP_000644904.1    Uniprot ID   P0ACN8
Organism   Escherichia coli strain B-1109     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 75157..86182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PT723_RS00340 metJ 76218..76535 (+) 318 WP_000852812.1 met regulon transcriptional regulator MetJ -
  PT723_RS00345 yiiX 76719..77327 (+) 609 WP_000797353.1 YiiX family permuted papain-like enzyme -
  PT723_RS00350 rpmE 77388..77600 (-) 213 WP_000710769.1 50S ribosomal protein L31 -
  PT723_RS00355 priA 77803..80001 (+) 2199 WP_001301269.1 primosomal protein N' Machinery gene
  PT723_RS00360 cytR 80157..81182 (+) 1026 WP_000644904.1 DNA-binding transcriptional regulator CytR Regulator
  PT723_RS00365 ftsN 81274..82233 (+) 960 WP_000068828.1 cell division protein FtsN -
  PT723_RS00370 hslV 82326..82856 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  PT723_RS00375 hslU 82866..84197 (+) 1332 WP_001293341.1 HslU--HslV peptidase ATPase subunit -
  PT723_RS00380 menA 84264..85190 (+) 927 WP_000139496.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  PT723_RS00385 rraA 85283..85768 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  PT723_RS00390 zapB 85853..86098 (-) 246 WP_001296623.1 septal ring assembly protein ZapB -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37819.78 Da        Isoelectric Point: 6.3842

>NTDB_id=719882 PT723_RS00360 WP_000644904.1 80157..81182(+) (cytR) [Escherichia coli strain B-1109]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=719882 PT723_RS00360 WP_000644904.1 80157..81182(+) (cytR) [Escherichia coli strain B-1109]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACCGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAGCTGGAG
CTGCCTACAGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

64.179

98.24

0.63
  cytR Vibrio cholerae C6706

65.443

95.894

0.628